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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1047551" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA1047551 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
174726 174726 PRJNA1047551_S_NODE_7661_length_184_cov_6.832215_g7534_i0 PRJNA1047551 7661 184 6.832215 12.5712756 Volvox carteri 3067 Plants Plants 62.1 2.61e-5   NTclustered gi|302839476|ref|XM_002951249.1| 3068 g7534 i0 92.857 0.228260869565217 42 3 23 0 141 182 470 429 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 40S small subunit (rps15), mRNA blastn 42 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
1009855 1009855 PRJNA1047551_S_NODE_9301_length_172_cov_2.240876_g9174_i0 PRJNA1047551 9301 172 2.240876 3.85430672 Chlorophyta 3041 Plants Plants 228 2.2299999999999997e-55   NTclustered gi|1518373083|gb|MK201746.1| 152768 g9174 i0 90.751 99.0290697674419 173 12 99 4 2 172 825 995 Diplosphaera chodatii strain KZ-26-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17033 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera chodatii
2724990 2724990 PRJNA1047551_S_NODE_11223_length_161_cov_1.571429_g11096_i0 PRJNA1047551 11223 161 1.571429 2.53000069 Haematococcus lacustris 44745 Plants Plants 241 2.66e-59   NTclustered gi|1279575454|gb|MF683078.1| 44745 g11096 i0 94.304 312.031055900621 158 8 98 1 1 158 3839 3683 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 50237 241 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
4001220 4001220 PRJNA1047551_S_NODE_8304_length_179_cov_5.166667_g8177_i0 PRJNA1047551 8304 179 5.166667 9.24833393 Pseudomuriella schumacherensis 889459 Plants Plants 108 3.19e-19   NTclustered gi|1008861385|ref|NC_029669.1| 889459 g8177 i0 98.361 47.2569832402235 61 1 34 0 2 62 100908 100848 Pseudomuriella schumacherensis strain SAG 2137 chloroplast, complete genome blastn 8459 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Pseudomuriellaceae Pseudomuriella Pseudomuriella schumacherensis
5277512 5277512 PRJNA1047551_S_NODE_7325_length_187_cov_14.098684_g7198_i0 PRJNA1047551 7325 187 14.098684 26.36453908 Corbierea radiosa 51318 Plants Plants 294 2.4100000000000003e-75   NTclustered gi|18654306|gb|L42987.1|RTCCPRGOLB 51318 g7198 i0 97.661 34.7219251336898 171 4 91 0 1 171 1762 1592 Carteria radiosa large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product blastn 6493 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Corbierea Corbierea radiosa
9102223 9102223 PRJNA1047551_S_NODE_4148_length_232_cov_5.086294_g4021_i0 PRJNA1047551 4148 232 5.086294 11.80020208 Tetradesmus obliquus 3088 Plants Plants 407 3.84e-109   NTclustered gi|294358545|gb|GU732418.1| 3088 g4021 i0 98.276 99.9784482758621 232 4 100 0 1 232 272 41 Scenedesmus obliquus isolate YSR04 28S ribosomal RNA gene, partial sequence blastn 23195 407 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
11653069 11653069 PRJNA1047551_S_NODE_13290_length_152_cov_0.940171_g13163_i0 PRJNA1047551 13290 152 0.940171 1.42905992 Scherffelia dubia 3190 Plants Plants 126 7.22e-25   NTclustered gi|87330880|gb|DQ270259.1| 3190 g13163 i0 82 0.986842105263158 150 25 98 2 1 149 501 353 Scherffelia dubia glyceraldehyde-3-phosphate dehydrogenase subunit A (gapA) mRNA, complete cds blastn 150 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
14203477 14203477 PRJNA1047551_S_NODE_9932_length_168_cov_2.120301_g9805_i0 PRJNA1047551 9932 168 2.120301 3.56210568 Trebouxia sp. SL0000003 3350044 Plants Plants 89.8 1.08e-13   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g9805 i0 96.296 0.321428571428571 54 2 32 0 1 54 159695 159748 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 54 89.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
16751448 16751448 PRJNA1047551_S_NODE_12714_length_154_cov_1.521008_g12587_i0 PRJNA1047551 12714 154 1.521008 2.34235232 Coccomyxa subellipsoidea 248742 Plants Plants 169 1.2e-37   NTclustered gi|545367280|ref|XM_005648425.1| 574566 g12587 i0 91.736 5.87012987012987 121 10 79 0 2 122 410 530 Coccomyxa subellipsoidea C-169 ribosomal protein S9 component of cytosolic 80S ribosome and 40S small subunit partial mRNA blastn 904 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
16751626 16751626 PRJNA1047551_S_NODE_7194_length_189_cov_1.253247_g7067_i0 PRJNA1047551 7194 189 1.253247 2.36863683 Trebouxia aggregata 160068 Plants Plants 80.5 7.44e-11   NTclustered gi|162134372|gb|EU123990.1| 160068 g7067 i0 82.418 2.44444444444444 91 16 48 0 34 124 3905 3815 Trebouxia aggregata strain SAG 219-1d M polypeptide of photosystem I (psaM), hypothetical chloroplast RF12 (ycf12), and K protein of photosystem II (psbK) genes, complete cds; and magnesium chelatase subunit of protochlorophyllide (chlI) gene, partial cds; chloroplast blastn 462 80.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
20575538 20575538 PRJNA1047551_S_NODE_10117_length_167_cov_1.659091_g9990_i0 PRJNA1047551 10117 167 1.659091 2.77068197 Asteromonas gracilis 3156 Plants Plants 230 6.029999999999999e-56   NTclustered gi|66864256|gb|DQ015711.1| 3156 g9990 i0 94.079 90.7844311377246 152 7 90 2 1 151 210 60 Asteromonas gracilis strain CCMP 813 26S ribosomal RNA gene, partial sequence blastn 15161 230 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Asteromonadaceae Asteromonas Asteromonas gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;