RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1047321" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047321 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5277232 5277232 PRJNA1047321_P_NODE_5205_length_279_cov_1.490291_g5034_i0 PRJNA1047321 5205 279 1.490291 4.15791189 Luteolibacter sp. AS25 3135776 Bacteria Bacteria 516 7.58e-142   NTclustered gi|2889346039|gb|CP151837.1| 3135776 g5034 i0 100 275.971326164875 279 0 100 0 1 279 456866 456588 Luteolibacter sp. AS25 chromosome, complete genome blastn 76996 516 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. AS25
18026220 18026220 PRJNA1047321_P_NODE_4215_length_313_cov_1.604167_g4045_i0 PRJNA1047321 4215 313 1.604167 5.02104271 Luteolibacter sp. 1962973 Bacteria Bacteria 425 1.4999999999999999e-114   NTclustered gi|2836248208|gb|CP121322.1| 1962973 g4045 i0 91.318 81.814696485623 311 27 99 0 1 311 1010302 1009992 MAG: Luteolibacter sp. isolate NCC532_bact_1514 chromosome, complete genome blastn 25608 425 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
24400492 24400492 PRJNA1047321_P_NODE_8380_length_242_cov_1.366864_g8209_i0 PRJNA1047321 8380 242 1.366864 3.30781088 Pedosphaera parvula 1032527 Bacteria Bacteria 383 6.81e-102   NTclustered gi|183579829|emb|AM905426.1| 320771 g8209 i0 95.082 196.739669421488 244 10 100 2 1 242 1678 1921 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 47611 383 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;