RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1047321" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047321 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6552387 6552387 PRJNA1047321_P_NODE_6566_length_251_cov_0.865169_g6395_i0 PRJNA1047321 6566 251 0.865169 2.17157419 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 265 2.68e-66   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g6395 i0 86.611 0.952191235059761 239 32 95 0 6 244 4365539 4365301 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 239 265 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
19300175 19300175 PRJNA1047321_P_NODE_1616_length_544_cov_2.407643_g1449_i0 PRJNA1047321 1616 544 2.407643 13.09757792 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 706 0   NTclustered gi|2874253938|emb|OY970263.1| 412054 g1449 i0 90.164 149.544117647059 549 44 99 7 1 543 802074 802618 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 81352 706 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19300179 19300179 PRJNA1047321_P_NODE_3436_length_351_cov_2.395683_g3266_i0 PRJNA1047321 3436 351 2.395683 8.40884733 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 568 2.6599999999999998e-157   NTclustered gi|2874253938|emb|OY970263.1| 412054 g3266 i0 96.254 512.524216524217 347 11 99 1 5 351 802018 801674 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 179896 568 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19300188 19300188 PRJNA1047321_P_NODE_4616_length_297_cov_2.437500_g4446_i0 PRJNA1047321 4616 297 2.4375 7.239375 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 316 8.86e-82   NTclustered gi|2874253938|emb|OY970263.1| 412054 g4446 i0 85.953 96.7845117845118 299 38 100 3 1 297 802660 802956 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 28745 316 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;