RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1047321" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047321 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7827024 7827024 PRJNA1047321_P_NODE_3147_length_369_cov_2.033784_g2978_i0 PRJNA1047321 3147 369 2.033784 7.50466296 Bryobacterales bacterium 2026791 Bacteria Bacteria 564 3.64e-156   NTclustered gi|2874253826|emb|OY969810.1| 2026791 g2978 i0 94.309 102.921409214092 369 20 99 1 1 368 6660304 6659936 MAG: Bryobacterales bacterium isolate MFD04967.bin.c.1 genome assembly, chromosome: 1 blastn 37978 564 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
7827030 7827030 PRJNA1047321_P_NODE_3907_length_328_cov_0.898039_g3737_i0 PRJNA1047321 3907 328 0.898039 2.94556792 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.009   NTclustered gi|2874253836|emb|OY969886.1| 171953 g3737 i0 96.875 0.0975609756097561 32 1 10 0 73 104 2338543 2338574 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
14203116 14203116 PRJNA1047321_P_NODE_4672_length_295_cov_2.707207_g4502_i0 PRJNA1047321 4672 295 2.707207 7.98626065 Paludibaculum fermentans 1473598 Bacteria Bacteria 379 1.11e-100   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g4502 i0 89.831 202.081355932203 295 30 100 0 1 295 4787469 4787175 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 59614 379 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
19300185 19300185 PRJNA1047321_P_NODE_4316_length_309_cov_2.411017_g4146_i0 PRJNA1047321 4316 309 2.411017 7.45004253 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 405 1.92e-108   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g4146 i0 90.291 249.330097087379 309 30 100 0 1 309 3559324 3559016 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 77043 405 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;