RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1047321" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047321 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9937931 9937931 PRJNA1047321_P_NODE_7568_length_246_cov_0.890173_g7397_i0 PRJNA1047321 7568 246 0.890173 2.18982558 Hantzschia 186033 SAR_Eukaryotes SAR_Eukaryotes 449 6.74e-122   NTclustered gi|694880084|gb|KM116093.1| 186034 g7397 i0 100 99.1056910569106 243 0 99 0 4 246 356 114 Hantzschia amphioxys clone E07 18S ribosomal RNA gene, partial sequence blastn 24380 449 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Hantzschia Hantzschia amphioxys
15477196 15477196 PRJNA1047321_P_NODE_6693_length_250_cov_0.870056_g6522_i0 PRJNA1047321 6693 250 0.870056 2.17514 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 292 1.2299999999999999e-74   NTclustered gi|820695469|tpe|LN714488.1| 572307 g6522 i0 87.698 10.436 252 29 100 2 1 250 302050 302301 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 2609 292 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
20575497 20575497 PRJNA1047321_P_NODE_5637_length_268_cov_1.533333_g5466_i0 PRJNA1047321 5637 268 1.533333 4.10933244 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 250 8.11e-62   NTclustered gi|820695469|tpe|LN714488.1| 572307 g5466 i0 88.78 14.8246268656716 205 22 100 1 1 205 302243 302446 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 3973 250 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;