RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1047321" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA1047321 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2724963 2724963 PRJNA1047321_P_NODE_943_length_717_cov_2.434783_g808_i0 PRJNA1047321 943 717 2.434783 17.45739411 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 191 1.4599999999999998e-43   NTclustered gi|2216086607|gb|ON142617.1| 5763 g808 i0 76.154 25.3277545327755 390 78 53 15 310 692 644 263 Naegleria fowleri isolate CC large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 18160 191 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
14203097 14203097 PRJNA1047321_P_NODE_272_length_1279_cov_14.382255_g214_i0 PRJNA1047321 272 1279 14.382255 183.94904145 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 263 5.55e-65   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g214 i0 77.282 14.573885848319 471 91 43 11 6 466 3189 2725 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18640 263 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
14203112 14203112 PRJNA1047321_P_NODE_412_length_1076_cov_12.198405_g333_i0 PRJNA1047321 412 1076 12.198405 131.2548378 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 165 1.35e-35   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g333 i0 85.987 15.3317843866171 157 18 14 3 2 155 4618 4463 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16497 165 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
15477156 15477156 PRJNA1047321_P_NODE_113_length_1784_cov_16.571596_g82_i0 PRJNA1047321 113 1784 16.571596 295.63727264 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 2556 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g82 i0 92.562 44.1479820627803 1788 124 100 9 1 1784 12 1794 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 78760 2556 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
19300187 19300187 PRJNA1047321_P_NODE_4556_length_299_cov_7.946903_g4386_i0 PRJNA1047321 4556 299 7.946903 23.76123997 Vrihiamoeba italica 660567 Heterolobosea other_Eukaryota 187 7.3e-43   NTclustered gi|254587474|dbj|AB513361.1| 660567 g4386 i0 88.462 0.521739130434783 156 16 52 2 144 299 271 424 Vrihiamoeba italica genes for ITS1, 5.8S rRNA, ITS2, partial and complete sequence blastn 156 187 1 Eukaryota Discoba   Heterolobosea     Gruberellidae Vrihiamoeba Vrihiamoeba italica
20575474 20575474 PRJNA1047321_P_NODE_2397_length_432_cov_2.225627_g2228_i0 PRJNA1047321 2397 432 2.225627 9.61470864 Stachyamoeba lipophora 463046 Heterolobosea other_Eukaryota 243 2.31e-59   NTclustered gi|756877602|ref|NC_026312.1| 463046 g2228 i0 85.169 45.5023148148148 236 35 55 0 130 365 1992 1757 Stachyamoeba lipophora strain ATCC 50324 culture-collection ATCC:50324 mitochondrion, complete genome blastn 19657 243 1 Eukaryota Discoba   Heterolobosea     Gruberellidae Stachyamoeba Stachyamoeba lipophora
24400448 24400448 PRJNA1047321_P_NODE_2780_length_396_cov_1.690402_g2611_i0 PRJNA1047321 2780 396 1.690402 6.69399192 Naegleria sp. SUM3V/I 395914 Heterolobosea other_Eukaryota 228 5.869999999999998e-55   NTclustered gi|110766915|gb|DQ768723.1| 395914 g2611 i0 87.317 26.3888888888889 205 18 50 8 5 203 2058 1856 Naegleria sp. SUM3V/I small subunit ribosomal RNA gene, partial sequence blastn 10450 228 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp. SUM3V/I

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;