RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1046144" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1046144 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5275122 5275122 PRJNA1046144_P_NODE_39925_length_271_cov_3.579208_g39630_i0 PRJNA1046144 39925 271 3.579208 9.69965368 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 196 1.08e-45   NTclustered gi|2907625691|emb|OZ223251.1| 2081706 g39630 i0 82.96 23.7859778597786 223 32 81 5 41 260 90929 90710 MAG: Bacteriovoracaceae bacterium isolate 56684ba0-df17-47c9-bcf5-ee076427a4fa genome assembly, chromosome: 1 blastn 6446 196 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
7824865 7824865 PRJNA1046144_P_NODE_37527_length_279_cov_1.371429_g37232_i0 PRJNA1046144 37527 279 1.371429 3.82628691 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 230 1.1099999999999995e-55   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g37232 i0 81.915 55.3799283154122 282 42 99 5 2 279 665905 665629 Bdellovibrio sp. qaytius chromosome, complete genome blastn 15451 230 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
23124546 23124546 PRJNA1046144_P_NODE_38339_length_276_cov_2.062802_g38044_i0 PRJNA1046144 38339 276 2.062802 5.69333352 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 196 1.11e-45   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g38044 i0 80.989 80.9057971014493 263 37 93 12 21 276 3251502 3251758 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 22330 196 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;