RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA1046144" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJNA1046144 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2722520 2722520 PRJNA1046144_P_NODE_27403_length_318_cov_2.658635_g27108_i0 PRJNA1046144 27403 318 2.658635 8.4544593 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 488 1.9199999999999997e-133   NTclustered gi|330902855|gb|JF298253.1| 1017091 g27108 i0 94.357 75.4905660377358 319 16 100 2 1 318 1615 1932 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 24006 488 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
3998752 3998752 PRJNA1046144_P_NODE_37324_length_279_cov_10.438095_g37029_i0 PRJNA1046144 37324 279 10.438095 29.12228505 Protacanthamoeba sp. GERE3 1002215 Discosea other_Eukaryota 211 4.01e-50   NTclustered gi|327391627|gb|HM363625.1| 1002215 g37029 i0 81.72 27.8960573476703 279 27 100 17 1 279 304 558 Protacanthamoeba sp. GERE3 small subunit ribosomal RNA gene, partial sequence blastn 7783 211 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba sp. GERE3
6550428 6550428 PRJNA1046144_P_NODE_44386_length_260_cov_2.638743_g44091_i0 PRJNA1046144 44386 260 2.638743 6.8607318 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 364 2.679999999999999e-96   NTclustered gi|300078498|gb|GU001160.1| 5755 g44091 i0 91.76 1.02692307692308 267 15 100 6 1 260 5658 5924 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 267 364 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12925791 12925791 PRJNA1046144_P_NODE_28371_length_314_cov_1.257143_g28076_i0 PRJNA1046144 28371 314 1.257143 3.94742902 Vannella planctonica 1678069 Discosea other_Eukaryota 553 6.609999999999998e-153   NTclustered gi|861554250|gb|KP719193.1| 1678069 g28076 i0 98.408 96.171974522293 314 5 100 0 1 314 616 929 Vannella planctonica strain A2FBB small subunit ribosomal RNA gene, partial sequence blastn 30198 553 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella planctonica
12926076 12926076 PRJNA1046144_P_NODE_42851_length_264_cov_1.605128_g42556_i0 PRJNA1046144 42851 264 1.605128 4.23753792 Amoebozoa sp. Pugl67W 1637493 Root_unresolved Root_unresolved 473 4.3399999999999986e-129   NTclustered gi|799102480|gb|KP792398.1| 1637493 g42556 i0 99.237 94.4924242424242 262 2 99 0 3 264 317 56 Amoebozoa sp. Pugl67W 18S ribosomal RNA gene, partial sequence blastn 24946 473 1 Eukaryota Amoebozoa             Amoebozoa sp. Pugl67W
13762508 13762508 PRJNA1046144_P_NODE_31691_length_299_cov_2.504348_g31396_i0 PRJNA1046144 31691 299 2.504348 7.48800052 Acanthamoeba 5754 Discosea other_Eukaryota 553 6.25e-153   NTclustered gi|1427939342|gb|MH620776.1| 5756 g31396 i0 100 99.9899665551839 299 0 100 0 1 299 663 961 Acanthamoeba sp. strain Krym small subunit ribosomal RNA gene, partial sequence blastn 29897 553 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
13762816 13762816 PRJNA1046144_P_NODE_66231_length_228_cov_0.905660_g65936_i0 PRJNA1046144 66231 228 0.90566 2.0649048 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 422 1.34e-113   NTclustered gi|1497462138|gb|MG945010.1| 5755 g65936 i0 100 100 228 0 100 0 1 228 879 1106 Acanthamoeba castellanii isolate PRZT013 18S ribosomal RNA gene, partial sequence blastn 22800 422 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14201117 14201117 PRJNA1046144_P_NODE_46492_length_255_cov_3.290323_g46197_i0 PRJNA1046144 46492 255 3.290323 8.39032365 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 113 1.05e-20   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g46197 i0 86.111 40.0509803921569 108 11 42 2 1 108 4470 4367 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10213 113 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
14201205 14201205 PRJNA1046144_P_NODE_50632_length_246_cov_1.807910_g50337_i0 PRJNA1046144 50632 246 1.80791 4.4474586 Fuligo septica 159720 Evosea other_Eukaryota 211 3.46e-50   NTclustered gi|37515398|emb|AJ584697.1| 159720 g50337 i0 94.203 2.13821138211382 138 8 56 0 31 168 13866 14003 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 526 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
18023630 18023630 PRJNA1046144_P_NODE_12955_length_444_cov_2.448000_g12660_i0 PRJNA1046144 12955 444 2.448 10.86912 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 656 0   NTclustered gi|330902855|gb|JF298253.1| 1017091 g12660 i0 93.512 47.8693693693694 447 19 100 8 1 444 1303 864 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 21254 656 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
18860500 18860500 PRJNA1046144_P_NODE_15015_length_415_cov_2.826590_g14720_i0 PRJNA1046144 15015 415 2.82659 11.7303485 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 710 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g14720 i0 97.59 22.7638554216867 415 9 99 1 1 414 4029 4443 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9447 717 0.99023709902371 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19297605 19297605 PRJNA1046144_P_NODE_13676_length_433_cov_5.887363_g13381_i0 PRJNA1046144 13676 433 5.887363 25.49228179 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 717 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g13381 i0 96.552 41.554272517321 435 11 100 4 1 433 7098 6666 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 17993 717 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20135552 20135552 PRJNA1046144_P_NODE_3676_length_808_cov_4.235453_g3433_i0 PRJNA1046144 3676 808 4.235453 34.22246024 Vermamoeba 1260114 Tubulinea other_Eukaryota 1332 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g3433 i0 96.411 49.8898514851485 808 29 100 0 1 808 5784 4977 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 40311 1338 0.995515695067265 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20573265 20573265 PRJNA1046144_P_NODE_32997_length_294_cov_3.728889_g32702_i0 PRJNA1046144 32997 294 3.728889 10.96293366 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 508 1.35e-139   NTclustered gi|300078498|gb|GU001160.1| 5755 g32702 i0 97.959 33.4761904761905 294 4 100 2 1 294 5363 5654 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9842 508 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21848959 21848959 PRJNA1046144_P_NODE_26498_length_323_cov_1.700787_g26203_i0 PRJNA1046144 26498 323 1.700787 5.49354201 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 544 4.1e-150   NTclustered gi|300078498|gb|GU001160.1| 5755 g26203 i0 97.214 41.5201238390093 323 5 100 2 1 323 7487 7805 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13411 544 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21849131 21849131 PRJNA1046144_P_NODE_36858_length_281_cov_1.778302_g36563_i0 PRJNA1046144 36858 281 1.778302 4.99702862 Dictydiaethalium plumbeum 1334544 Evosea other_Eukaryota 231 3.0999999999999994e-56   NTclustered gi|501417077|gb|JX481291.1| 1334544 g36563 i0 83.534 85.1423487544484 249 39 88 2 34 281 1377 1624 Dictydiaethalium plumbeum voucher AMFD185 18S ribosomal RNA gene, partial sequence blastn 23925 231 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Liceales Dictydiaethaliaceae Dictydiaethalium Dictydiaethalium plumbeum
22685870 22685870 PRJNA1046144_P_NODE_25618_length_327_cov_2.782946_g25323_i0 PRJNA1046144 25618 327 2.782946 9.10023342 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 566 8.879999999999998e-157   NTclustered gi|300078496|gb|GU001158.1| 5778 g25323 i0 97.859 41.1009174311927 327 7 100 0 1 327 1228 902 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13440 566 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23124417 23124417 PRJNA1046144_P_NODE_31919_length_298_cov_4.777293_g31624_i0 PRJNA1046144 31919 298 4.777293 14.23633314 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 484 2.3e-132   NTclustered gi|300078496|gb|GU001158.1| 5778 g31624 i0 95.973 23.6879194630872 298 12 100 0 1 298 1240 1537 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7059 484 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25235379 25235379 PRJNA1046144_P_NODE_31560_length_300_cov_1.246753_g31265_i0 PRJNA1046144 31560 300 1.246753 3.740259 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 555 1.7399999999999995e-153   NTclustered gi|909719646|gb|KT185626.1| 5755 g31265 i0 100 61.9766666666667 300 0 100 0 1 300 3585 3884 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18593 555 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;