RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1044115" and tax_superkingdom = "Viruses"

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tax_kingdom 2

tax_superkingdom 1

  • Viruses · 8 ✖

bioproject 1

  • PRJNA1044115 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2284053 2284053 PRJNA1044115_P_NODE_31522_length_262_cov_1.582011_g31338_i0 PRJNA1044115 31522 262 1.582011 4.14486882 root 1 Root_unresolved Root_unresolved 281 2.8e-71   NTclustered gi|2612326376|gb|OR712768.1| 11276 g31338 i0 100 58.0152671755725 152 0 58 0 111 262 3076 2925 Vesicular stomatitis virus isolate CIPZB1-VSV-Indiana, complete genome blastn 15200 281 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
3559519 3559519 PRJNA1044115_P_NODE_40263_length_244_cov_0.912281_g40079_i0 PRJNA1044115 40263 244 0.912281 2.22596564 root 1 Root_unresolved Root_unresolved 451 1.86e-122   NTclustered gi|811917904|gb|KP872870.1| 11277 g40079 i0 100 100 244 0 100 0 1 244 10923 10680 Vesicular stomatitis Indiana virus isolate N3Bp30 NS, matrix, nucleocapsid, glycoprotein precursor, and polymerase genes, complete cds blastn 24400 451 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesiculovirus indiana
12487695 12487695 PRJNA1044115_P_NODE_21130_length_317_cov_1.278689_g20946_i0 PRJNA1044115 21130 317 1.278689 4.05344413 root 1 Root_unresolved Root_unresolved 586 6.579999999999998e-163   NTclustered gi|2612326376|gb|OR712768.1| 11276 g20946 i0 100 99.5268138801262 317 0 100 0 1 317 5021 4705 Vesicular stomatitis virus isolate CIPZB1-VSV-Indiana, complete genome blastn 31550 586 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
15036530 15036530 PRJNA1044115_P_NODE_36692_length_249_cov_0.886364_g36508_i0 PRJNA1044115 36692 249 0.886364 2.20704636 root 1 Root_unresolved Root_unresolved 460 3.16e-125   NTclustered gi|2649349941|gb|OR995580.1| 11276 g36508 i0 100 100 249 0 100 0 1 249 9141 8893 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 24900 460 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
17586620 17586620 PRJNA1044115_P_NODE_26774_length_282_cov_2.239234_g26590_i0 PRJNA1044115 26774 282 2.239234 6.31463988 root 1 Root_unresolved Root_unresolved 521 1.6499999999999996e-143   NTclustered gi|2649349941|gb|OR995580.1| 11276 g26590 i0 100 99.9858156028369 282 0 100 0 1 282 1036 1317 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 28196 521 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
21848359 21848359 PRJNA1044115_P_NODE_28898_length_273_cov_1.250000_g28714_i0 PRJNA1044115 28898 273 1.25 3.4125 Orthoreovirus piscis 3431498 Viruses Viruses 303 6.27e-78   NTclustered gi|2634039173|gb|OR872662.1| 1157337 g28714 i0 92.202 11.5274725274725 218 12 95 4 14 227 1911 2127 Piscine orthoreovirus isolate WADDL:2021-1143 mu1 protein gene, partial cds blastn 3147 303 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Spinareoviridae Orthoreovirus Orthoreovirus piscis
23123676 23123676 PRJNA1044115_P_NODE_27399_length_279_cov_3.252427_g27215_i0 PRJNA1044115 27399 279 3.252427 9.07427133 Gammaretrovirus murleu 3428959 Viruses Viruses 510 3.5299999999999996e-140   NTclustered gi|38155073|gb|AY349142.1| 11786 g27215 i0 99.642 94.1039426523297 279 1 100 0 1 279 320 42 Murine leukemia virus isolate SP(B)2 unknown mRNA blastn 26255 510 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
25235086 25235086 PRJNA1044115_P_NODE_36620_length_249_cov_1.255682_g36436_i0 PRJNA1044115 36620 249 1.255682 3.12664818 root 1 Root_unresolved Root_unresolved 460 3.16e-125   NTclustered gi|2649349941|gb|OR995580.1| 11276 g36436 i0 100 100 249 0 100 0 1 249 2512 2760 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 24900 460 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;