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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA1044115" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1044115 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2722056 2722056 PRJNA1044115_P_NODE_39703_length_245_cov_0.906977_g39519_i0 PRJNA1044115 39703 245 0.906977 2.22209365 Picea glauca 3330 Plants Plants 154 5.89e-33   NTclustered gi|270136242|gb|BT103194.1| 3330 g39519 i0 78.788 47.2816326530612 231 47 94 2 5 234 487 716 Picea glauca clone GQ0208_C23 mRNA sequence blastn 11584 154 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea glauca
7824339 7824339 PRJNA1044115_P_NODE_5447_length_677_cov_5.692053_g5278_i0 PRJNA1044115 5447 677 5.692053 38.53519881 Oryza sativa 4530 Plants Plants 582 1.94e-161   NTclustered gi|32994371|dbj|AK109162.1| 39947 g5278 i0 82.292 100.088626292467 672 119 99 0 1 672 369 1040 Oryza sativa Japonica Group cDNA clone:002-155-G09, full insert sequence blastn 67760 582 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
8661973 8661973 PRJNA1044115_P_NODE_27027_length_281_cov_1.903846_g26843_i0 PRJNA1044115 27027 281 1.903846 5.34980726 Eukaryota 2759 Plants Plants 187 6.809999999999998e-43   NTclustered gi|1173821329|ref|XM_011090943.2| 4182 g26843 i0 80.408 27.0498220640569 245 48 87 0 3 247 898 1142 PREDICTED: Sesamum indicum cell division cycle protein 48 homolog (LOC105170266), mRNA blastn 7601 187 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Pedaliaceae Sesamum Sesamum indicum
12925222 12925222 PRJNA1044115_P_NODE_34071_length_253_cov_0.866667_g33887_i0 PRJNA1044115 34071 253 0.866667 2.19266751 Allium cepa 4679 Plants Plants 390 4.28e-104   NTclustered gi|1524345309|gb|MH017542.1| 4679 g33887 i0 94.466 5.69169960474308 253 14 100 0 1 253 236 488 Allium cepa clone ac198993 acepCL7Contig93 repeat region blastn 1440 390 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium cepa
15036520 15036520 PRJNA1044115_P_NODE_30792_length_265_cov_1.468750_g30608_i0 PRJNA1044115 30792 265 1.46875 3.8921875 Musa 4640 Plants Plants 490 4.3299999999999986e-134   NTclustered gi|2046372313|dbj|LC609770.1| 4641 g30608 i0 100 101 265 0 100 0 1 265 43398 43134 Musa acuminata cv. Morado chloroplast DNA, complete genome blastn 26765 490 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
16311217 16311217 PRJNA1044115_P_NODE_31853_length_261_cov_0.920213_g31669_i0 PRJNA1044115 31853 261 0.920213 2.40175593 Magnoliopsida 3398 Plants Plants 455 1.55e-123   NTclustered gi|133900038|gb|EF135610.1| 124827 g31669 i0 98.084 100 261 5 100 0 1 261 309 49 Endospermum moluccanum 26S ribosomal RNA gene, partial sequence blastn 26100 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Euphorbiaceae Endospermum Endospermum moluccanum
16748459 16748459 PRJNA1044115_P_NODE_32114_length_260_cov_1.064171_g31930_i0 PRJNA1044115 32114 260 1.064171 2.7668446 Brassica napus 3708 Plants Plants 60.2 1.42e-4   NTclustered gi|2258217032|ref|XM_048738471.1| 3708 g31930 i0 88.462 4.42307692307692 52 2 19 3 118 167 1238 1287 PREDICTED: Brassica napus myrosinase-binding protein 2-like (LOC106360475), transcript variant X2, mRNA blastn 1150 60.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
16748522 16748522 PRJNA1044115_P_NODE_35914_length_250_cov_1.322034_g35730_i0 PRJNA1044115 35914 250 1.322034 3.305085 Pinus taeda 3352 Plants Plants 287 5.7e-73   NTclustered gi|297747432|gb|AC241314.1| 3352 g35730 i0 88.703 28.316 239 22 94 3 11 246 129378 129614 Pinus taeda clone PT_7Ba3152O20, complete sequence blastn 7079 287 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Pinus Pinus taeda
19297342 19297342 PRJNA1044115_P_NODE_34816_length_252_cov_0.871508_g34632_i0 PRJNA1044115 34816 252 0.871508 2.19620016 Benincasa hispida 102211 Plants Plants 52.8 0.023   NTclustered gi|1955874634|ref|XM_039039330.1| 102211 g34632 i0 96.875 0.507936507936508 32 0 13 1 7 38 902 932 PREDICTED: Benincasa hispida DNA-directed RNA polymerases II and IV subunit 5A-like (LOC120083535), transcript variant X3, mRNA blastn 128 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Benincasa Benincasa hispida
19297527 19297527 PRJNA1044115_P_NODE_9436_length_495_cov_4.457346_g9253_i0 PRJNA1044115 9436 495 4.457346 22.0638627 Calluna vulgaris 13385 Plants Plants 52.8 0.048   NTclustered gi|2917527253|emb|OZ224584.1| 13385 g9253 i0 100 0.113131313131313 28 0 6 0 455 482 52156 52183 Calluna vulgaris genome assembly, chromosome: 5 blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;