RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1044115" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1044115 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2721808 2721808 PRJNA1044115_P_NODE_22763_length_305_cov_1.211207_g22579_i0 PRJNA1044115 22763 305 1.211207 3.69418135 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 388 1.91e-103   NTclustered gi|60689342|gb|AY915233.1| 6182 g22579 i0 93.511 45.5606557377049 262 16 86 1 39 299 1 262 Schistosoma japonicum SJCHGC03747 protein mRNA, complete cds blastn 13896 388 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
5274551 5274551 PRJNA1044115_P_NODE_9105_length_506_cov_1.533487_g8922_i0 PRJNA1044115 9105 506 1.533487 7.75944422 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 536 1.12e-147   NTclustered gi|60600058|gb|AY810684.1| 6182 g8922 i0 99.659 10.2588932806324 293 1 58 0 214 506 578 286 Schistosoma japonicum SJCHGC04723 protein mRNA, partial cds blastn 5191 540 0.992592592592593 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
6549459 6549459 PRJNA1044115_P_NODE_27166_length_280_cov_3.468599_g26982_i0 PRJNA1044115 27166 280 3.468599 9.7120772 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 206 1.8699999999999998e-48   NTclustered gi|28317711|gb|AY223236.1| 6182 g26982 i0 81.008 17.325 258 49 92 0 4 261 817 560 Schistosoma japonicum clone ZZD363 mRNA sequence blastn 4851 206 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
20572517 20572517 PRJNA1044115_P_NODE_25357_length_289_cov_2.120370_g25173_i0 PRJNA1044115 25357 289 2.12037 6.1278693 Fasciola hepatica 6192 Platyhelminthes Platyhelminthes 250 8.84e-62   NTclustered gi|313757792|gb|HM535939.1| 6192 g25173 i0 82.517 98.961937716263 286 48 99 2 2 286 343 627 Fasciola hepatica isolate 217bt3 beta tubulin 3-like (bt3) gene, partial sequence blastn 28600 250 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;