RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1044115" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1044115 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6111963 6111963 PRJNA1044115_P_NODE_40085_length_244_cov_1.415205_g39901_i0 PRJNA1044115 40085 244 1.415205 3.4531002 Metazoa 33208 Mollusca Mollusca 451 1.86e-122   NTclustered gi|1928112764|gb|MT947788.1| 6523 g39901 i0 100 99.8852459016394 244 0 100 0 1 244 878 1121 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 24372 451 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
7386597 7386597 PRJNA1044115_P_NODE_42486_length_238_cov_2.072727_g42302_i0 PRJNA1044115 42486 238 2.072727 4.93309026 Metazoa 33208 Mollusca Mollusca 440 3.899999999999999e-119   NTclustered gi|1928112764|gb|MT947788.1| 6523 g42302 i0 100 99.9495798319328 238 0 100 0 1 238 1156 1393 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 23788 440 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
11650176 11650176 PRJNA1044115_P_NODE_44150_length_202_cov_4.116279_g43966_i0 PRJNA1044115 44150 202 4.116279 8.31488358 Galeommatoidea sp. MN19374 1873786 Mollusca Mollusca 159 1.01e-34   NTclustered gi|1050775354|gb|KX375938.1| 1873786 g43966 i0 81.675 87.4158415841584 191 35 95 0 2 192 35 225 Galeommatoidea sp. MN19374 histone H3 (H3) gene, partial cds blastn 17658 159 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Galeommatida     Galeommatoidea sp. MN19374
15474390 15474390 PRJNA1044115_P_NODE_35613_length_251_cov_0.876404_g35429_i0 PRJNA1044115 35613 251 0.876404 2.19977404 Bradybaena similaris 145626 Mollusca Mollusca 58.4 4.89e-4   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g35429 i0 89.13 0.183266932270916 46 5 18 0 141 186 47058311 47058356 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 46 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
23123608 23123608 PRJNA1044115_P_NODE_23159_length_302_cov_1.838428_g22975_i0 PRJNA1044115 23159 302 1.838428 5.55205256 Patella vulgata 6465 Mollusca Mollusca 239 2.01e-58   NTclustered gi|2506342283|ref|XM_050559823.2| 6465 g22975 i0 81.145 11.4205298013245 297 56 98 0 1 297 686 982 PREDICTED: Patella vulgata rRNA 2'-O-methyltransferase fibrillarin (LOC126829721), mRNA blastn 3449 239 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;