RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1044115" and tax_phylum = "Duplornaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Duplornaviricota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1044115 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21848359 21848359 PRJNA1044115_P_NODE_28898_length_273_cov_1.250000_g28714_i0 PRJNA1044115 28898 273 1.25 3.4125 Orthoreovirus piscis 3431498 Viruses Viruses 303 6.27e-78   NTclustered gi|2634039173|gb|OR872662.1| 1157337 g28714 i0 92.202 11.5274725274725 218 12 95 4 14 227 1911 2127 Piscine orthoreovirus isolate WADDL:2021-1143 mu1 protein gene, partial cds blastn 3147 303 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Spinareoviridae Orthoreovirus Orthoreovirus piscis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;