RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1044115" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1044115 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1446413 1446413 PRJNA1044115_P_NODE_7222_length_579_cov_5.814229_g7041_i0 PRJNA1044115 7222 579 5.814229 33.66438591 Vannella septentrionalis 197531 Discosea other_Eukaryota 370 1.39e-97   NTclustered gi|300078499|gb|GU001161.1| 197531 g7041 i0 80.838 49.7046632124352 501 70 85 18 87 579 2975 2493 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 28779 370 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
20572675 20572675 PRJNA1044115_P_NODE_34897_length_252_cov_0.871508_g34713_i0 PRJNA1044115 34897 252 0.871508 2.19620016 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 399 7.079999999999999e-107   NTclustered gi|470429052|ref|XM_004338107.1| 1257118 g34713 i0 95.238 1 252 12 100 0 1 252 1840 1589 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_177500), partial mRNA blastn 252 399 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20572837 20572837 PRJNA1044115_P_NODE_8997_length_509_cov_2.252294_g8814_i0 PRJNA1044115 8997 509 2.252294 11.46417646 Platyamoeba placida 3454475 Discosea other_Eukaryota 686 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g8814 i0 90.963 99.4302554027505 509 46 100 0 1 509 337 845 Platyamoeba placida actin mRNA, partial cds blastn 50610 686 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;