RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1041773" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1041773 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
170698 170698 PRJNA1041773_P_NODE_68801_length_264_cov_1.612565_g68468_i0 PRJNA1041773 68801 264 1.612565 4.2571716 Geobacter sp. DSM 9736 1277350 Bacteria Bacteria 84.2 8.55e-12   NTclustered gi|1210070030|emb|LT896716.1| 1277350 g68468 i0 90.476 12.6818181818182 63 6 24 0 196 258 2106368 2106430 Geobacter sp. DSM 9736 genome assembly, chromosome: I blastn 3348 84.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. DSM 9736
3559376 3559376 PRJNA1041773_P_NODE_85803_length_247_cov_2.195402_g85470_i0 PRJNA1041773 85803 247 2.195402 5.42264294 Pseudomonadati 3379134 Bacteria Bacteria 383 6.97e-102   NTclustered gi|2045533567|gb|CP074693.1| 35554 g85470 i0 94.737 69.2429149797571 247 11 100 1 1 247 84074 83830 Geobacter sulfurreducens strain YM35 chromosome, complete genome blastn 17103 385 0.994805194805195 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
12924771 12924771 PRJNA1041773_P_NODE_93751_length_244_cov_0.900585_g93418_i0 PRJNA1041773 93751 244 0.900585 2.1974274 Desulfosarcina ovata 83564 Bacteria Bacteria 84.2 7.8e-12   NTclustered gi|1774952549|dbj|AP021879.1| 2752305 g93418 i0 94.444 0.221311475409836 54 3 22 0 1 54 7167771 7167718 Desulfosarcina ovata subsp. ovata oXyS1 DNA, complete genome blastn 54 84.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina ovata
13762129 13762129 PRJNA1041773_P_NODE_89251_length_246_cov_0.890173_g88918_i0 PRJNA1041773 89251 246 0.890173 2.18982558 Desulfovibrio 872 Bacteria Bacteria 342 1.1799999999999997e-89   NTclustered gi|1894914451|emb|LT984798.1| 631220 g88918 i0 91.87 4 246 18 99 2 2 246 2678503 2678259 Desulfovibrio sp. G11 isolate G11PacBio genome assembly, chromosome: 1 blastn 984 342 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. G11

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;