RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1041773" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1041773 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1445588 1445588 PRJNA1041773_P_NODE_84702_length_248_cov_0.880000_g84369_i0 PRJNA1041773 84702 248 0.88 2.1824 Urbifossiella limnaea 2528023 Bacteria Bacteria 211 3.5e-50   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g84369 i0 85.047 38.3709677419355 214 25 84 4 40 248 6276760 6276971 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 9516 211 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
9098263 9098263 PRJNA1041773_P_NODE_68768_length_264_cov_1.612565_g68435_i0 PRJNA1041773 68768 264 1.612565 4.2571716 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 305 1.68e-78   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g68435 i0 87.594 1.9280303030303 266 30 100 3 1 264 10014963 10015227 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 509 305 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
19296346 19296346 PRJNA1041773_P_NODE_57816_length_284_cov_1.459716_g57483_i0 PRJNA1041773 57816 284 1.459716 4.14559344 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 261 4e-65   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g57483 i0 84 6.70422535211268 275 40 95 4 1 271 402471 402745 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 1904 261 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
20572271 20572271 PRJNA1041773_P_NODE_97697_length_242_cov_1.556213_g97364_i0 PRJNA1041773 97697 242 1.556213 3.76603546 Urbifossiella limnaea 2528023 Bacteria Bacteria 265 2.5699999999999997e-66   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g97364 i0 86.42 12.6115702479339 243 31 100 2 1 242 5797945 5798186 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 3052 265 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
24396742 24396742 PRJNA1041773_P_NODE_68120_length_265_cov_1.604167_g67787_i0 PRJNA1041773 68120 265 1.604167 4.25104255 Humisphaera borealis 2807512 Bacteria Bacteria 294 3.64e-75   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g67787 i0 87.5 16.0415094339623 256 30 96 2 8 262 1749512 1749766 Humisphaera borealis strain M1803 chromosome, complete genome blastn 4251 294 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;