RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1041773" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1041773 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1444889 1444889 PRJNA1041773_P_NODE_36822_length_347_cov_2.678832_g36489_i0 PRJNA1041773 36822 347 2.678832 9.29554704 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 503 7.55e-138   NTclustered gi|166044524|emb|CU367433.1| 100861 g36489 i0 92.795 98.6167146974063 347 25 100 0 1 347 783 437 Aphanomyces euteiches cDNA blastn 34220 503 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9936249 9936249 PRJNA1041773_P_NODE_100048_length_241_cov_1.583333_g99715_i0 PRJNA1041773 100048 241 1.583333 3.8158325299999998 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 115 2.73e-21   NTclustered gi|33520231|gb|AY273976.1| 240413 g99715 i0 93.506 31.3734439834025 77 5 32 0 1 77 446 522 Peronospora aff. dentariae MG 18-6 large subunit ribosomal RNA gene, partial sequence blastn 7561 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora aff. dentariae MG 18-6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;