RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1041773" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1041773 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2721288 2721288 PRJNA1041773_P_NODE_77583_length_251_cov_0.865169_g77250_i0 PRJNA1041773 77583 251 0.865169 2.17157419 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|687022649|emb|LM525563.1| 174720 g77250 i0 100 0.115537848605578 29 0 12 0 76 104 561381 561353 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000008 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
7823563 7823563 PRJNA1041773_P_NODE_82327_length_249_cov_0.875000_g81994_i0 PRJNA1041773 82327 249 0.875 2.17875 Caenorhabditis remanei 31234 Nematoda Nematoda 294 3.39e-75   NTclustered gi|2445366874|ref|XM_003111644.2| 31234 g81994 i0 88.477 97.2449799196787 243 28 98 0 7 249 23 265 Caenorhabditis remanei uncharacterized protein (GCK72_010699), partial mRNA blastn 24214 294 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
12924018 12924018 PRJNA1041773_P_NODE_44771_length_318_cov_1.281633_g44438_i0 PRJNA1041773 44771 318 1.281633 4.07559294 Caenorhabditis briggsae 6238 Nematoda Nematoda 289 2.09e-73   NTclustered gi|11095039|gb|AC084589.1|CBRG41K24 6238 g44438 i0 87.854 89.4905660377358 247 29 78 1 44 290 5795 6040 Caenorhabditis briggsae cosmid G41K24, complete sequence blastn 28458 289 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;