RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1041773" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1041773 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5272910 5272910 PRJNA1041773_P_NODE_27145_length_400_cov_1.079511_g26814_i0 PRJNA1041773 27145 400 1.079511 4.318044 Candidatus Sulfurimonas baltica 2740404 Bacteria Bacteria 52.8 0.038   NTclustered gi|1929272150|gb|CP054492.1| 2740404 g26814 i0 100 0.07 28 0 7 0 122 149 1962145 1962172 Candidatus Sulfurimonas baltica strain GD2 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Candidatus Sulfurimonas baltica
19296942 19296942 PRJNA1041773_P_NODE_99016_length_242_cov_0.911243_g98683_i0 PRJNA1041773 99016 242 0.911243 2.20520806 Halarcobacter mediterraneus 2023153 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621784616|emb|OY781074.1| 2023153 g98683 i0 100 0.115702479338843 28 0 12 0 86 113 1830706 1830679 MAG: Halarcobacter mediterraneus isolate a5fc0a89-db13-449e-aec2-f9d0956b3340 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Halarcobacter Halarcobacter mediterraneus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;