RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1041773" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1041773 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
170682 170682 PRJNA1041773_P_NODE_67401_length_266_cov_2.559585_g67068_i0 PRJNA1041773 67401 266 2.5595850000000002 6.8084961 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 52.8 0.024   NTclustered gi|2874253744|emb|OY969603.1| 171953 g67068 i0 100 0.105263157894737 28 0 11 0 214 241 1839024 1838997 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6548898 6548898 PRJNA1041773_P_NODE_80226_length_250_cov_0.870056_g79893_i0 PRJNA1041773 80226 250 0.870056 2.17514 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 296 9.47e-76   NTclustered gi|2874254120|emb|OY970205.1| 194844 g79893 i0 88.797 32.692 241 27 96 0 10 250 211394 211634 MAG: uncultured Acidobacteriaceae bacterium isolate MFD02248.bin.1.24 genome assembly, chromosome: 1 blastn 8173 296 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
24396913 24396913 PRJNA1041773_P_NODE_79780_length_250_cov_0.870056_g79447_i0 PRJNA1041773 79780 250 0.870056 2.17514 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 213 9.81e-51   NTclustered gi|2874253678|emb|OY969112.1| 171953 g79447 i0 89.017 68.972 173 18 69 1 15 186 6553740 6553912 MAG: uncultured Acidobacteriota bacterium isolate MFD04212.bin.1.16 genome assembly, chromosome: 1 blastn 17243 213 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;