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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1040136" and tax_superkingdom = "Bacteria"

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tax_kingdom 2

tax_clade 2

tax_superkingdom 1

  • Bacteria · 7 ✖

bioproject 1

  • PRJNA1040136 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7822346 7822346 PRJNA1040136_S_NODE_147_length_559_cov_2.481481_g144_i0 PRJNA1040136 147 559 2.481481 13.87147879 Planctomycetota bacterium 2026780 Bacteria Bacteria 54.7 0.015   NTclustered gi|2621706020|emb|OY764082.1| 2026780 g144 i0 96.875 0.21824686940966 32 1 6 0 25 56 522043 522074 MAG: Planctomycetota bacterium isolate b62d8c61-b663-4402-817f-8d709632624f genome assembly, chromosome: 1 blastn 122 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
10372971 10372971 PRJNA1040136_S_NODE_129_length_577_cov_3.019841_g126_i0 PRJNA1040136 129 577 3.019841 17.42448257 Natroniella sp. ANB-PHB2 3384444 Bacteria Bacteria 54.7 0.016   NTclustered gi|2869714905|gb|CP175562.1| 3384444 g126 i0 100 0.0502599653379549 29 0 5 0 355 383 1966746 1966718 Natroniella sp. ANB-PHB2 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Bacillota Clostridia Halanaerobiales Halobacteroidaceae Natroniella Natroniella sp. ANB-PHB2
14198346 14198346 PRJNA1040136_S_NODE_592_length_382_cov_4.200647_g589_i0 PRJNA1040136 592 382 4.200647 16.04647154 Flavobacterium dauae 1563479 Bacteria Bacteria 56.5 0.003   NTclustered gi|2557430891|gb|CP130821.1| 1563479 g589 i0 100 0.0785340314136126 30 0 8 0 265 294 1161409 1161438 Flavobacterium dauae strain TCH3-2 chromosome, complete genome blastn 30 56.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium dauae
15472563 15472563 PRJNA1040136_S_NODE_1653_length_277_cov_1.073529_g1650_i0 PRJNA1040136 1653 277 1.073529 2.97367533 Flavobacterium ammonificans 1751056 Bacteria Bacteria 484 2.1199999999999996e-132   NTclustered gi|2119752067|dbj|AP025185.1| 1751056 g1650 i0 98.195 1.9927797833935 277 5 100 0 1 277 1055518 1055794 Flavobacterium ammonificans SHINM13 DNA, complete genome blastn 552 484 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium ammonificans
18021607 18021607 PRJNA1040136_S_NODE_415_length_425_cov_8.258523_g412_i0 PRJNA1040136 415 425 8.258523 35.09872275 Priestia megaterium 1404 Bacteria Bacteria 52.8 0.041   NTclustered gi|1935015176|gb|CP064793.1| 1404 g412 i0 100 0.0658823529411765 28 0 7 0 331 358 3980692 3980665 Priestia megaterium strain IGA-FME-1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Priestia Priestia megaterium
20570913 20570913 PRJNA1040136_S_NODE_1517_length_284_cov_1.957346_g1514_i0 PRJNA1040136 1517 284 1.957346 5.55886264 Vibrio gallaecicus 552386 Bacteria Bacteria 52.8 0.026   NTclustered gi|2271101991|dbj|AP025490.1| 552386 g1514 i0 100 0.0985915492957746 28 0 10 0 1 28 1609580 1609553 Vibrio gallaecicus CECT 7244 DNA, chromosome 1, complete sequence blastn 28 52.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gallaecicus
24395797 24395797 PRJNA1040136_S_NODE_1820_length_269_cov_4.336735_g1817_i0 PRJNA1040136 1820 269 4.336735 11.66581715 Latilactobacillus sakei 1599 Bacteria Bacteria 52.8 0.025   NTclustered gi|2254134276|gb|CP015487.1| 1599 g1817 i0 94.118 0.12639405204461 34 2 13 0 92 125 1607396 1607429 Latilactobacillus sakei strain TMW 1.46 chromosome, complete genome blastn 34 52.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;