RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1040136" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1040136 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16746717 16746717 PRJNA1040136_S_NODE_1214_length_303_cov_1.682609_g1211_i0 PRJNA1040136 1214 303 1.682609 5.09830527 Cordyceps militaris 73501 Fungi Fungi 104 7.68e-18   NTclustered gi|573975827|ref|XM_006665796.1| 983644 g1211 i0 92.958 0.234323432343234 71 5 23 0 64 134 1 71 Cordyceps militaris CM01 uncharacterized protein (CCM_00636), partial mRNA blastn 71 104 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Cordycipitaceae Cordyceps Cordyceps militaris
22684974 22684974 PRJNA1040136_S_NODE_278_length_471_cov_2.384422_g275_i0 PRJNA1040136 278 471 2.384422 11.23062762 root 1 Root_unresolved Root_unresolved 870 0   NTclustered gi|822603163|emb|LN831877.1| 4932 g275 i0 100 74.5626326963907 471 0 100 0 1 471 535 1005 Saccharomyces cerevisiae YPL248C/GAL4 gene for transcription factor, strain 6320-A7 blastn 35119 870 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
25234364 25234364 PRJNA1040136_S_NODE_760_length_349_cov_1.782609_g757_i0 PRJNA1040136 760 349 1.782609 6.22130541 Pichiomycetes 3239874 Fungi Fungi 113 1.49e-20   NTclustered gi|126132391|ref|XM_001382684.1| 322104 g757 i0 89.773 16.8424068767908 88 9 25 0 94 181 360 447 Scheffersomyces stipitis CBS 6054 40S ribosomal protein S14 (RSP14), mRNA blastn 5878 113 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Scheffersomyces Scheffersomyces stipitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;