RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1040136" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1040136 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1444405 1444405 PRJNA1040136_S_NODE_1702_length_275_cov_1.143564_g1699_i0 PRJNA1040136 1702 275 1.143564 3.144801 Soliformovum expulsum 435423 Evosea other_Eukaryota 363 1.03e-95   NTclustered gi|260909293|gb|FJ766479.1| 435423 g1699 i0 90.775 72.1309090909091 271 25 99 0 1 271 883 1153 Soliformovum expulsum culture-collection ATCC:48083 clone pool B 18S ribosomal RNA gene, partial sequence blastn 19836 363 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum expulsum
24395798 24395798 PRJNA1040136_S_NODE_1880_length_267_cov_1.438144_g1877_i0 PRJNA1040136 1880 267 1.438144 3.83984448 Soliformovum irregulare 435424 Evosea other_Eukaryota 180 1.07e-40   NTclustered gi|146448863|gb|EF513199.1| 435424 g1877 i0 92.126 38.0524344569288 127 10 48 0 1 127 1082 1208 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 10160 180 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;