RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1036688" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11648179 11648179 PRJNA1036688_P_NODE_4430_length_297_cov_3.000000_g4138_i0 PRJNA1036688 4430 297 3 8.91 Entamoeba gingivalis 38877 Evosea other_Eukaryota 544 3.7299999999999996e-150   NTclustered gi|2781670152|dbj|LC832224.1| 38877 g4138 i0 99.663 97.3670033670034 297 1 100 0 1 297 278 574 Entamoeba gingivalis ST1-1_human_Ishikawa_H118_2017 gene for 18S ribosomal RNA, partial sequence blastn 28918 544 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
14198266 14198266 PRJNA1036688_P_NODE_6392_length_229_cov_1.583333_g6100_i0 PRJNA1036688 6392 229 1.583333 3.62583257 Entamoeba histolytica 5759 Evosea other_Eukaryota 183 6.939999999999998e-42   NTclustered gi|467633|emb|Z29969.1| 5759 g6100 i0 88.667 46.7598253275109 150 17 66 0 1 150 1632 1483 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 10708 183 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
24395737 24395737 PRJNA1036688_P_NODE_7400_length_205_cov_5.059524_g7108_i0 PRJNA1036688 7400 205 5.059524 10.3720242 Entamoeba gingivalis 38877 Evosea other_Eukaryota 363 7.279999999999998e-96   NTclustered gi|1200176476|gb|KX027290.1| 38877 g7108 i0 100 85.5707317073171 196 0 96 0 1 196 198 3 Entamoeba gingivalis strain O46 18S ribosomal RNA gene, partial sequence blastn 17542 363 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;