RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1036688" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1036688 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169682 169682 PRJNA1036688_P_NODE_8741_length_185_cov_0.878378_g8449_i0 PRJNA1036688 8741 185 0.878378 1.6249993 Apus apus 8895 Chordata Chordata 52.8 0.016   NTclustered gi|2323521672|ref|XM_051632190.1| 8895 g8449 i0 100 0.756756756756757 28 0 15 0 20 47 3274 3301 PREDICTED: Apus apus ankyrin repeat and fibronectin type-III domain-containing protein 1-like (LOC127390480), transcript variant X5, mRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Apus Apus apus
4836117 4836117 PRJNA1036688_P_NODE_11184_length_159_cov_0.934426_g10892_i0 PRJNA1036688 11184 159 0.934426 1.48573734 Artiodactyla 91561 Chordata Chordata 230 5.67e-56   NTclustered gi|2871638751|ref|XM_070463227.1| 9874 g10892 i0 93.038 735.25786163522 158 10 99 1 1 157 1306 1149 PREDICTED: Odocoileus virginianus centrosomal protein of 70 kDa-like (LOC110124377), transcript variant X10, mRNA blastn 116906 230 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
7822313 7822313 PRJNA1036688_P_NODE_9087_length_180_cov_1.636364_g8795_i0 PRJNA1036688 9087 180 1.636364 2.9454552 Gallus gallus 9031 Chordata Chordata 333 4.87e-87   NTclustered gi|2024360878|ref|XR_005840240.1| 9031 g8795 i0 100 91.5055555555556 180 0 100 0 1 180 661 840 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121106977), rRNA blastn 16471 333 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
9936187 9936187 PRJNA1036688_P_NODE_3228_length_365_cov_2.445122_g2937_i0 PRJNA1036688 3228 365 2.445122 8.9246953 Fringillidae 9133 Chordata Chordata 56.5 0.003   NTclustered gi|2917691352|emb|OZ228803.1| 37598 g2937 i0 100 2.87123287671233 30 0 8 0 328 357 4884895 4884866 Fringilla coelebs genome assembly, chromosome: 24 blastn 1048 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
13761496 13761496 PRJNA1036688_P_NODE_8411_length_189_cov_3.111842_g8119_i0 PRJNA1036688 8411 189 3.111842 5.88138138 Artiodactyla 91561 Chordata Chordata 342 8.589999999999999e-90   NTclustered gi|2871702816|ref|XM_070457416.1| 9874 g8119 i0 99.468 1428.42328042328 188 1 99 0 2 189 472 659 PREDICTED: Odocoileus virginianus zinc finger and BTB domain containing 44 (ZBTB44), transcript variant X2, mRNA blastn 269972 342 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
16746654 16746654 PRJNA1036688_P_NODE_6994_length_214_cov_2.203390_g6702_i0 PRJNA1036688 6994 214 2.20339 4.7152546 Gallus gallus 9031 Chordata Chordata 396 7.559999999999996e-106   NTclustered gi|2024360878|ref|XR_005840240.1| 9031 g6702 i0 100 107.31308411215 214 0 100 0 1 214 4355 4142 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121106977), rRNA blastn 22965 396 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
20134498 20134498 PRJNA1036688_P_NODE_8516_length_188_cov_1.019868_g8224_i0 PRJNA1036688 8516 188 1.019868 1.91735184 Lepidosauria 8504 Chordata Chordata 60.2 9.63e-5   NTclustered gi|2118978504|ref|XR_006362838.1| 7888 g8224 i0 88 4.95212765957447 50 6 27 0 32 81 1626 1577 PREDICTED: Protopterus annectens 28S ribosomal RNA (LOC122789521), rRNA blastn 931 60.2 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
21410114 21410114 PRJNA1036688_P_NODE_12037_length_152_cov_1.313043_g11745_i0 PRJNA1036688 12037 152 1.313043 1.99582536 Bos 9903 Chordata Chordata 270 3.15e-68   NTclustered gi|226437713|gb|AC150644.6| 9913 g11745 i0 98.684 758.381578947368 152 2 100 0 1 152 90603 90754 Bos taurus BAC CH240-223I2 (Children's Hospital Oakland Research Institute Bovine BAC Library complete sequence blastn 115274 270 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;