RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA1036688" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1036688 · 21 ✖

analysis 1

  • blastn · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2720083 2720083 PRJNA1036688_P_NODE_3643_length_338_cov_20.687708_g3352_i0 PRJNA1036688 3643 338 20.687708 69.92445304 uncultured Trebouxia photobiont 285713 Plants Plants 562 1.19e-155   NTclustered gi|1273623725|gb|KY033354.1| 285713 g3352 i0 96.746 20.3195266272189 338 9 100 2 1 338 8822 8487 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6868 562 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
2720096 2720096 PRJNA1036688_P_NODE_5423_length_258_cov_2.443439_g5131_i0 PRJNA1036688 5423 258 2.443439 6.30407262 Trebouxia lynnae 1825957 Plants Plants 405 1.56e-108   NTclustered gi|1750939486|gb|MH917293.1| 1825957 g5131 i0 96 99.7441860465116 250 9 97 1 1 250 17310 17558 Trebouxia sp. TR9 mitochondrion, complete genome blastn 25734 405 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
5272540 5272540 PRJNA1036688_P_NODE_8765_length_184_cov_2.639456_g8473_i0 PRJNA1036688 8765 184 2.639456 4.85659904 Trebouxia sp. I15 2884548 Plants Plants 324 3.01e-84   NTclustered gi|2117340442|gb|OK533751.1| 2884548 g8473 i0 98.37 92.8913043478261 184 3 100 0 1 184 98 281 Trebouxia sp. I15 voucher 16569 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17092 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. I15
6111250 6111250 PRJNA1036688_P_NODE_3905_length_322_cov_6.859649_g3613_i0 PRJNA1036688 3905 322 6.859649 22.08806978 Watanabeales 2981622 Plants Plants 359 1.5899999999999998e-94   NTclustered gi|294358549|gb|GU732422.1| 63676 g3613 i0 86.997 91.8229813664596 323 37 100 5 1 322 273 591 Pseudochlorella sp. CCAP 211/1A isolate YSR03 28S ribosomal RNA gene, partial sequence blastn 29567 361 0.994459833795014 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
7385887 7385887 PRJNA1036688_P_NODE_9746_length_172_cov_65.111111_g9454_i0 PRJNA1036688 9746 172 65.111111 111.99111092 Trebouxia 13786 Plants Plants 291 2.81e-74   NTclustered gi|255506485|gb|FJ687229.1| 53269 g9454 i0 97.093 166.046511627907 172 5 100 0 1 172 1225 1054 Trebouxia gelatinosa strain UTEX 906 23S ribosomal RNA gene, partial sequence; and hypothetical protein gene, complete cds; chloroplast blastn 28560 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia gelatinosa
9097274 9097274 PRJNA1036688_P_NODE_6948_length_215_cov_2.432584_g6656_i0 PRJNA1036688 6948 215 2.432584 5.2300556 Trebouxia sp. I15 2884548 Plants Plants 366 5.96e-97   NTclustered gi|2117340341|gb|OK533711.1| 2884548 g6656 i0 97.235 49.2651162790698 217 4 100 1 1 215 263 47 Trebouxia sp. I15 voucher 16218 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 10592 366 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. I15
10372889 10372889 PRJNA1036688_P_NODE_3709_length_334_cov_17.212121_g3418_i0 PRJNA1036688 3709 334 17.212121 57.48848414 uncultured Trebouxia photobiont 285713 Plants Plants 374 5.9199999999999995e-99   NTclustered gi|94448902|emb|AM159502.1| 285713 g3418 i0 94.286 64.0898203592814 245 13 73 1 91 334 1221 977 Uncultured Trebouxia photobiont partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 26S rRNA gene, clone L-66-Ia blastn 21406 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
11648186 11648186 PRJNA1036688_P_NODE_5470_length_256_cov_14.703196_g5178_i0 PRJNA1036688 5470 256 14.703196 37.64018176 Trebouxia sp. I15 2884548 Plants Plants 435 1.98e-117   NTclustered gi|2117341232|gb|OK534053.1| 2884548 g5178 i0 97.266 98.6171875 256 7 100 0 1 256 418 673 Trebouxia sp. I15 voucher 16517a internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 25246 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. I15
12923337 12923337 PRJNA1036688_P_NODE_11151_length_159_cov_1.475410_g10859_i0 PRJNA1036688 11151 159 1.47541 2.3459019 Trebouxia lynnae 1825957 Plants Plants 156 9.75e-34   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g10859 i0 84.906 2 159 18 97 5 1 154 5722 5879 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 318 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
14198304 14198304 PRJNA1036688_P_NODE_9612_length_174_cov_1.715328_g9320_i0 PRJNA1036688 9612 174 1.715328 2.98467072 Trebouxia gelatinosa 53269 Plants Plants 246 6.26e-61   NTclustered gi|5918299|emb|AJ249568.1| 53269 g9320 i0 92.941 36.2701149425287 170 10 97 2 1 169 317 149 Trebouxia gelatinosa 18S rRNA gene, 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2) blastn 6311 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia gelatinosa
17585891 17585891 PRJNA1036688_P_NODE_10754_length_162_cov_12.584000_g10462_i0 PRJNA1036688 10754 162 12.584 20.38608 Stichococcaceae 2910630 Plants Plants 300 4.36e-77   NTclustered gi|557844190|gb|KF144234.1| 154978 g10462 i0 100 100 162 0 100 0 1 162 1423 1262 Stichococcus mirabilis isolate WB69 18S ribosomal RNA gene, partial sequence blastn 16200 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus mirabilis
18859709 18859709 PRJNA1036688_P_NODE_4735_length_282_cov_7.922449_g4443_i0 PRJNA1036688 4735 282 7.922449 22.34130618 Trebouxia 13786 Plants Plants 499 7.729999999999999e-137   NTclustered gi|2105089|emb|Z95382.1| 53269 g4443 i0 98.587 91.0035460992908 283 3 100 1 1 282 588 306 T.gelatinosa 26S rRNA gene blastn 25663 499 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia gelatinosa
20134478 20134478 PRJNA1036688_P_NODE_5576_length_252_cov_9.804651_g5284_i0 PRJNA1036688 5576 252 9.804651 24.70772052 Eukaryota 2759 Plants Plants 433 6.98e-117   NTclustered gi|399532147|gb|JQ627431.1| 171245 g5284 i0 97.619 99.8769841269841 252 6 100 0 1 252 449 700 Uncultured Chlorophyta clone B1_4_1E_144 small subunit ribosomal RNA gene, partial sequence blastn 25169 433 1 Eukaryota   Viridiplantae Chlorophyta         uncultured Chlorophyta
20134500 20134500 PRJNA1036688_P_NODE_8696_length_185_cov_2.824324_g8404_i0 PRJNA1036688 8696 185 2.824324 5.2249994 Prasiolaceae 135266 Plants Plants 281 1.8500000000000002e-71   NTclustered gi|806639636|gb|KR017749.1| 173492 g8404 i0 94.086 129.497297297297 186 9 100 2 1 185 3105 2921 Prasiola crispa clone Contig2 chloroplast sequence blastn 23957 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa
20570799 20570799 PRJNA1036688_P_NODE_11377_length_157_cov_1.608333_g11085_i0 PRJNA1036688 11377 157 1.608333 2.52508281 Microspora stagnorum 163317 Plants Plants 250 4.28e-62   NTclustered gi|563940464|ref|NC_022862.1| 163317 g11085 i0 95.541 6.42675159235669 157 6 100 1 1 157 1968 1813 Microspora stagnorum culture-collection SAG:51.86 mitochondrion, complete genome blastn 1009 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae   Microsporaceae Microspora Microspora stagnorum
21410112 21410112 PRJNA1036688_P_NODE_11577_length_155_cov_3.271186_g11285_i0 PRJNA1036688 11577 155 3.271186 5.0703383 Trebouxiophyceae 75966 Plants Plants 235 1.18e-57   NTclustered gi|746948124|ref|NC_025531.1| 33092 g11285 i0 94.156 124.793548387097 154 9 99 0 1 154 145882 146035 Koliella longiseta culture-collection UTEX:339 chloroplast, complete genome blastn 19343 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
21846594 21846594 PRJNA1036688_P_NODE_3518_length_345_cov_7.814935_g3227_i0 PRJNA1036688 3518 345 7.814935 26.96152575 Stichococcus bacillaris 37433 Plants Plants 322 2.25e-83   NTclustered gi|371782093|emb|HE610125.1| 37433 g3227 i0 96.41 15.4086956521739 195 7 57 0 151 345 7182 6988 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 5316 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
22684945 22684945 PRJNA1036688_P_NODE_7258_length_208_cov_16.836257_g6966_i0 PRJNA1036688 7258 208 16.836257 35.01941456 Trebouxia 13786 Plants Plants 340 3.4699999999999996e-89   NTclustered gi|1273623725|gb|KY033354.1| 285713 g6966 i0 96.154 101.317307692308 208 8 100 0 1 208 6610 6817 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 21074 340 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
22684951 22684951 PRJNA1036688_P_NODE_8318_length_190_cov_14.163399_g8026_i0 PRJNA1036688 8318 190 14.163399 26.9104581 Trebouxia 13786 Plants Plants 351 1.4399999999999997e-92   NTclustered gi|49781197|gb|AY648107.1| 283661 g8026 i0 100 100.152631578947 190 0 100 0 1 190 1417 1228 Trebouxia sp. Wei 22-c 26S ribosomal RNA gene, partial sequence blastn 19029 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Wei 22-c
23121920 23121920 PRJNA1036688_P_NODE_2519_length_431_cov_32.192893_g2230_i0 PRJNA1036688 2519 431 32.192893 138.75136883 Trebouxia asymmetrica 13787 Plants Plants 710 0   NTclustered gi|189909382|gb|EU725860.1| 13787 g2230 i0 96.503 112.480278422274 429 15 99 0 3 431 1782 1354 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 48479 710 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
24395707 24395707 PRJNA1036688_P_NODE_2800_length_403_cov_2.464481_g2510_i0 PRJNA1036688 2800 403 2.464481 9.93185843 uncultured Trebouxia photobiont 285713 Plants Plants 87.9 1.06e-12   NTclustered gi|1273623725|gb|KY033354.1| 285713 g2510 i0 75.369 0.503722084367246 203 38 49 8 63 259 480 676 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 203 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;