RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1036688" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169673 169673 PRJNA1036688_P_NODE_8021_length_195_cov_2.443038_g7729_i0 PRJNA1036688 8021 195 2.443038 4.7639241 Sarcocystis asinus 2925352 SAR_Eukaryotes SAR_Eukaryotes 71.3 4.65e-8   NTclustered gi|2206936643|gb|OM971684.1| 2925352 g7729 i0 84.507 3.92820512820513 71 11 36 0 53 123 1686 1616 Sarcocystis asinus isolate YDDSa2 large subunit ribosomal RNA gene, partial sequence blastn 766 71.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis asinus
5272499 5272499 PRJNA1036688_P_NODE_3645_length_338_cov_4.382060_g3354_i0 PRJNA1036688 3645 338 4.38206 14.8113628 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.91e-4   NTclustered gi|1931714359|ref|XR_552297.2| 54757 g3354 i0 86.792 2.5207100591716 53 7 16 0 171 223 4102 4050 Plasmodium vinckei vinckei ribosomal RNA (PVVCY_0502190), rRNA blastn 852 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
6547678 6547678 PRJNA1036688_P_NODE_10966_length_161_cov_1.072581_g10674_i0 PRJNA1036688 10966 161 1.072581 1.72685541 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 248 1.59e-61   NTclustered gi|820695469|tpe|LN714488.1| 572307 g10674 i0 94.41 1 161 9 100 0 1 161 80247 80407 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 161 248 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;