RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1036688" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1036688 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10372923 10372923 PRJNA1036688_P_NODE_8089_length_194_cov_3.038217_g7797_i0 PRJNA1036688 8089 194 3.038217 5.89414098 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 200 5.649999999999999e-47   NTclustered gi|300078498|gb|GU001160.1| 5755 g7797 i0 85.864 1.13917525773196 191 24 98 3 1 191 7631 7818 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 221 200 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11648179 11648179 PRJNA1036688_P_NODE_4430_length_297_cov_3.000000_g4138_i0 PRJNA1036688 4430 297 3 8.91 Entamoeba gingivalis 38877 Evosea other_Eukaryota 544 3.7299999999999996e-150   NTclustered gi|2781670152|dbj|LC832224.1| 38877 g4138 i0 99.663 97.3670033670034 297 1 100 0 1 297 278 574 Entamoeba gingivalis ST1-1_human_Ishikawa_H118_2017 gene for 18S ribosomal RNA, partial sequence blastn 28918 544 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
12923422 12923422 PRJNA1036688_P_NODE_9871_length_171_cov_2.022388_g9579_i0 PRJNA1036688 9871 171 2.022388 3.45828348 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 8.03e-50   NTclustered gi|300078498|gb|GU001160.1| 5755 g9579 i0 88.764 1.04093567251462 178 11 100 8 1 171 5730 5905 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 178 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13761465 13761465 PRJNA1036688_P_NODE_11351_length_157_cov_1.933333_g11059_i0 PRJNA1036688 11351 157 1.933333 3.03533281 Acanthamoeba 5754 Discosea other_Eukaryota 291 2.52e-74   NTclustered gi|2048436391|gb|MZ338428.1| 5756 g11059 i0 100 99.6369426751592 157 0 100 0 1 157 279 435 Acanthamoeba sp. isolate 4WT C6 small subunit ribosomal RNA gene, partial sequence blastn 15643 291 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
14198266 14198266 PRJNA1036688_P_NODE_6392_length_229_cov_1.583333_g6100_i0 PRJNA1036688 6392 229 1.583333 3.62583257 Entamoeba histolytica 5759 Evosea other_Eukaryota 183 6.939999999999998e-42   NTclustered gi|467633|emb|Z29969.1| 5759 g6100 i0 88.667 46.7598253275109 150 17 66 0 1 150 1632 1483 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 10708 183 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
19295529 19295529 PRJNA1036688_P_NODE_9276_length_178_cov_1.106383_g8984_i0 PRJNA1036688 9276 178 1.106383 1.96936174 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 281 1.76e-71   NTclustered gi|300078498|gb|GU001160.1| 5755 g8984 i0 95.055 33.8483146067416 182 3 100 5 1 178 5526 5705 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6025 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21410139 21410139 PRJNA1036688_P_NODE_6637_length_222_cov_2.497297_g6345_i0 PRJNA1036688 6637 222 2.497297 5.54399934 Acanthamoeba 5754 Discosea other_Eukaryota 383 6.1499999999999996e-102   NTclustered gi|158934024|emb|AM408799.1| 408877 g6345 i0 97.748 97.4144144144144 222 5 100 0 1 222 736 957 Acanthamoeba sp. EI4 partial 18S rRNA gene blastn 21626 383 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp. EI4
24395737 24395737 PRJNA1036688_P_NODE_7400_length_205_cov_5.059524_g7108_i0 PRJNA1036688 7400 205 5.059524 10.3720242 Entamoeba gingivalis 38877 Evosea other_Eukaryota 363 7.279999999999998e-96   NTclustered gi|1200176476|gb|KX027290.1| 38877 g7108 i0 100 85.5707317073171 196 0 96 0 1 196 198 3 Entamoeba gingivalis strain O46 18S ribosomal RNA gene, partial sequence blastn 17542 363 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;