RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1035005 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7821459 7821459 PRJNA1035005_P_NODE_41787_length_267_cov_1.608247_g41381_i0 PRJNA1035005 41787 267 1.608247 4.29401949 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 183 8.3e-42   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g41381 i0 82.326 20.1535580524345 215 34 80 4 37 249 3957034 3956822 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 5381 183 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
20570098 20570098 PRJNA1035005_P_NODE_53097_length_253_cov_1.688889_g52691_i0 PRJNA1035005 53097 253 1.688889 4.27288917 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 383 7.17e-102   NTclustered gi|2874254065|emb|OY970130.1| 412056 g52691 i0 94.715 99.296442687747 246 13 97 0 1 246 5154269 5154514 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 25122 383 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
24394700 24394700 PRJNA1035005_P_NODE_11400_length_350_cov_1.321300_g10995_i0 PRJNA1035005 11400 350 1.3213 4.62455 uncultured Opitutia bacterium 575426 Bacteria Bacteria 625 1.5499999999999995e-174   NTclustered gi|523452328|gb|KF182748.1| 575426 g10995 i0 98.857 99.8314285714286 350 4 100 0 1 350 481 830 Uncultured Opitutae bacterium clone S1-003 16S ribosomal RNA gene, partial sequence blastn 34941 625 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       uncultured Opitutia bacterium
24395061 24395061 PRJNA1035005_P_NODE_62200_length_250_cov_0.881356_g61794_i0 PRJNA1035005 62200 250 0.881356 2.20339 Prosthecobacter fusiformis 48464 Bacteria Bacteria 446 8.89e-121   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g61794 i0 98.8 45.784 250 3 100 0 1 250 1361 1610 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 11446 446 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;