RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5271788 5271788 PRJNA1035005_P_NODE_53705_length_253_cov_0.866667_g53299_i0 PRJNA1035005 53705 253 0.866667 2.19266751 Treponema sp. OMZ 803 120682 Bacteria Bacteria 457 4.16e-124   NTclustered gi|2265127813|gb|CP051195.1| 120682 g53299 i0 99.209 13.9683794466403 253 2 100 0 1 253 2439879 2439627 Treponema sp. OMZ 803 strain BF2M chromosome, complete genome blastn 3534 457 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 803
9096652 9096652 PRJNA1035005_P_NODE_70668_length_247_cov_0.896552_g70262_i0 PRJNA1035005 70668 247 0.896552 2.21448344 Treponema sp. OMZ 906 2563662 Bacteria Bacteria 457 4.05e-124   NTclustered gi|2265130757|gb|CP051196.1| 2563662 g70262 i0 100 12.919028340081 247 0 100 0 1 247 1993100 1992854 Treponema sp. OMZ 906 chromosome, complete genome blastn 3191 457 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 906
15035567 15035567 PRJNA1035005_P_NODE_57992_length_252_cov_0.871508_g57586_i0 PRJNA1035005 57992 252 0.871508 2.19620016 Treponema 157 Bacteria Bacteria 368 2e-97   NTclustered gi|2265127813|gb|CP051195.1| 120682 g57586 i0 99.505 8.72222222222222 202 1 100 0 51 252 949729 949528 Treponema sp. OMZ 803 strain BF2M chromosome, complete genome blastn 2198 368 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 803
15035584 15035584 PRJNA1035005_P_NODE_63152_length_250_cov_0.881356_g62746_i0 PRJNA1035005 63152 250 0.881356 2.20339 Treponema 157 Bacteria Bacteria 440 4.1399999999999976e-119   NTclustered gi|2265127813|gb|CP051195.1| 120682 g62746 i0 98.4 28.888 250 4 100 0 1 250 1396761 1397010 Treponema sp. OMZ 803 strain BF2M chromosome, complete genome blastn 7222 440 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 803
16310252 16310252 PRJNA1035005_P_NODE_45933_length_262_cov_1.439153_g45527_i0 PRJNA1035005 45933 262 1.439153 3.77058086 root 1 Root_unresolved Root_unresolved 52.8 0.024   NTclustered gi|157492948|gb|EF676062.1| 140 g45527 i0 100 0.534351145038168 28 0 11 0 231 258 660 633 Borrelia hermsii Vlp113 (vlp113) pseudogene, partial sequence blastn 140 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia hermsii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;