RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1035005 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6546887 6546887 PRJNA1035005_P_NODE_37586_length_272_cov_3.914573_g37180_i0 PRJNA1035005 37586 272 3.914573 10.64763856 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 278 3.78e-70   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g37180 i0 88.136 396.191176470588 236 25 86 3 37 271 2001871 2001638 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 107764 278 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
15471546 15471546 PRJNA1035005_P_NODE_19553_length_301_cov_3.754386_g19147_i0 PRJNA1035005 19553 301 3.754386 11.30070186 Limnoglobus roseus 2598579 Bacteria Bacteria 427 3.9799999999999998e-115   NTclustered gi|1733446852|gb|CP042425.1| 2598579 g19147 i0 92.359 98.6976744186046 301 21 100 1 1 301 2955179 2955477 Limnoglobus roseus strain PX52 chromosome, complete genome blastn 29708 427 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Limnoglobus Limnoglobus roseus
16745724 16745724 PRJNA1035005_P_NODE_26174_length_287_cov_2.602804_g25768_i0 PRJNA1035005 26174 287 2.602804 7.47004748 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 374 4.989999999999998e-99   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g25768 i0 90.311 163.766550522648 289 23 100 5 1 287 2002190 2001905 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 47001 374 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
18020673 18020673 PRJNA1035005_P_NODE_3455_length_584_cov_1.810176_g3062_i0 PRJNA1035005 3455 584 1.810176 10.57142784 uncultured Planctomycetota bacterium 120965 Bacteria Bacteria 922 0   NTclustered gi|576901573|gb|KF827166.1| 120965 g3062 i0 96.441 92.9897260273973 562 14 96 4 1 562 556 1 Uncultured planctomycete clone C-30-34 16S ribosomal RNA gene, partial sequence blastn 54306 922 1 Bacteria PVC group Pseudomonadati Planctomycetota         uncultured Planctomycetota bacterium
19294872 19294872 PRJNA1035005_P_NODE_71916_length_247_cov_0.896552_g71510_i0 PRJNA1035005 71916 247 0.896552 2.21448344 Planctomycetes bacterium K2D 2528022 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1712768844|gb|CP036350.1| 2527962 g71510 i0 100 28.7854251012146 247 0 100 0 1 247 4246591 4246837 Planctomycetes bacterium K2D chromosome, complete genome blastn 7110 457 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetes bacterium K2D

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;