RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1035005 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2719588 2719588 PRJNA1035005_P_NODE_83083_length_243_cov_0.917647_g82677_i0 PRJNA1035005 83083 243 0.917647 2.22988221 Fictor sp. 2 VS-2014 1538695 Nematoda Nematoda 104 5.96e-18   NTclustered gi|675118819|gb|KJ877289.1| 1538695 g82677 i0 79.861 4.88477366255144 144 28 59 1 32 174 198 55 Fictor sp. 2 VS-2014 strain RS9002 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 1187 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Fictor Fictor sp. 2 VS-2014
6546952 6546952 PRJNA1035005_P_NODE_4606_length_496_cov_2.014184_g4206_i0 PRJNA1035005 4606 496 2.014184 9.99035264 Oscheius tipulae 141969 Nematoda Nematoda 911 0   NTclustered gi|158821905|gb|EU195969.1| 141969 g4206 i0 99.798 100.618951612903 496 1 100 0 1 496 1895 1400 Oscheius tipulae strain CEW1 28S ribosomal RNA gene, partial sequence blastn 49907 911 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
7821479 7821479 PRJNA1035005_P_NODE_4527_length_501_cov_1.406542_g4128_i0 PRJNA1035005 4527 501 1.406542 7.04677542 Caenorhabditis elegans 6239 Nematoda Nematoda 58.4 0.001   NTclustered gi|413002270|emb|Z50005.2| 6239 g4128 i0 100 0.12375249500998 31 0 6 0 139 169 6337 6307 Caenorhabditis elegans Cosmid F16H9, complete sequence blastn 62 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
7821660 7821660 PRJNA1035005_P_NODE_69167_length_247_cov_2.902299_g68761_i0 PRJNA1035005 69167 247 2.902299 7.16867853 Parastrongyloides trichosuri 131310 Nematoda Nematoda 134 7.750000000000001e-27   NTclustered gi|9438175|gb|AF278536.1| 131310 g68761 i0 76.829 1.51012145748988 246 52 98 4 3 244 2699 2943 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds blastn 373 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Parastrongyloides Parastrongyloides trichosuri
11211286 11211286 PRJNA1035005_P_NODE_8609_length_382_cov_1.003236_g8207_i0 PRJNA1035005 8609 382 1.003236 3.83236152 Metazoa 33208 Nematoda Nematoda 228 5.639999999999998e-55   NTclustered gi|255098668|gb|FJ555023.1| 6325 g8207 i0 78.655 80.8821989528796 342 73 90 0 25 366 958 617 Bursaphelenchus mucronatus heat shock protein 70 (hsp70) mRNA, complete cds blastn 30897 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus mucronatus
19294497 19294497 PRJNA1035005_P_NODE_21776_length_294_cov_1.411765_g21370_i0 PRJNA1035005 21776 294 1.411765 4.1505891 Strongyloides ratti 34506 Nematoda Nematoda 226 1.52e-54   NTclustered gi|1376136021|ref|XM_024648069.1| 34506 g21370 i0 81.034 27.9421768707483 290 50 97 5 9 294 299 11 Strongyloides ratti Histone H3 (SRAE_1000114900), partial mRNA blastn 8215 226 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20569886 20569886 PRJNA1035005_P_NODE_22697_length_292_cov_1.401826_g22291_i0 PRJNA1035005 22697 292 1.401826 4.09333192 Caenorhabditis elegans 6239 Nematoda Nematoda 252 2.4899999999999998e-62   NTclustered gi|687865697|emb|LK927572.1| 6239 g22291 i0 84.17 132.325342465753 259 41 95 0 1 259 119839 120097 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000039 blastn 38639 252 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;