RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169200 169200 PRJNA1035005_P_NODE_9341_length_372_cov_1.304348_g8937_i0 PRJNA1035005 9341 372 1.304348 4.85217456 Pendulispora brunnea 2905690 Bacteria Bacteria 475 1.77e-129   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g8937 i0 89.785 142.373655913978 372 37 100 1 1 372 7408098 7408468 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 52963 475 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
24394706 24394706 PRJNA1035005_P_NODE_11960_length_345_cov_1.147059_g11555_i0 PRJNA1035005 11960 345 1.147059 3.95735355 Chondromyces crocatus 52 Bacteria Bacteria 593 4.3299999999999987e-165   NTclustered gi|169977285|emb|AM946600.1| 52 g11555 i0 97.681 151.582608695652 345 8 100 0 1 345 1948 2292 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 52296 593 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;