RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1035005 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1443360 1443360 PRJNA1035005_P_NODE_1262_length_1162_cov_3.764004_g980_i0 PRJNA1035005 1262 1162 3.764004 43.73772648 Acrasis rosea 43695 Heterolobosea other_Eukaryota 1094 0   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g980 i0 85.005 69.6256454388984 1087 151 93 11 25 1105 1081 1 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 80905 1094 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
9096621 9096621 PRJNA1035005_P_NODE_6608_length_419_cov_1.552023_g6206_i0 PRJNA1035005 6608 419 1.552023 6.50297637 Acrasis rosea 43695 Heterolobosea other_Eukaryota 294 6.07e-75   NTclustered gi|1561724|gb|U55245.1|ARU55245 43695 g6206 i0 81.301 0.964200477326969 369 63 87 6 54 419 17 382 Acrasis rosea glyceraldehyde-3-phosphate dehydrogenase gene, partial cds blastn 404 294 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
20569848 20569848 PRJNA1035005_P_NODE_18557_length_307_cov_0.982906_g18151_i0 PRJNA1035005 18557 307 0.982906 3.01752142 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 191 5.82e-44   NTclustered gi|290991132|ref|XM_002678144.1| 5762 g18151 i0 78.788 44.2866449511401 297 53 95 9 15 305 13 305 Naegleria gruberi ribosomal protein L3 (NAEGRDRAFT_79448), mRNA blastn 13596 191 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24395040 24395040 PRJNA1035005_P_NODE_59860_length_251_cov_0.876404_g59454_i0 PRJNA1035005 59860 251 0.876404 2.19977404 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 132 2.84e-26   NTclustered gi|291000265|ref|XM_002682654.1| 5762 g59454 i0 78.788 2.14741035856574 198 40 78 2 42 238 1163 967 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_29706), partial mRNA blastn 539 132 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;