RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA1035005 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169100 169100 PRJNA1035005_P_NODE_75601_length_245_cov_1.488372_g75195_i0 PRJNA1035005 75601 245 1.488372 3.6465114 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 119 2.15e-22   NTclustered gi|302026174|gb|GQ377702.1| 91374 g75195 i0 90.217 30.6040816326531 92 7 37 2 155 245 1317 1227 Diplonema papillatum beta-tubulin (Btub) mRNA, partial cds blastn 7498 119 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
169205 169205 PRJNA1035005_P_NODE_9821_length_366_cov_1.952218_g9416_i0 PRJNA1035005 9821 366 1.952218 7.14511788 Euglena gracilis 3039 Euglenozoa other_Eukaryota 268 3.17e-67   NTclustered gi|33694249|gb|AY288512.1| 3039 g9416 i0 80.165 65.0109289617486 363 68 99 4 6 366 937 1297 Euglena gracilis heat shock protein 70 mRNA, partial cds blastn 23794 268 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
1443728 1443728 PRJNA1035005_P_NODE_62422_length_250_cov_0.881356_g62016_i0 PRJNA1035005 62422 250 0.881356 2.20339 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 99 2.87e-16   NTclustered gi|1002433688|ref|XR_001548756.1| 157538 g62016 i0 74.621 37.572 264 48 100 15 1 250 377 119 Leptomonas pyrrhocoris 28S ribosomal RNA (LSU-beta) rRNA blastn 9393 99 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
3558457 3558457 PRJNA1035005_P_NODE_4303_length_515_cov_3.509050_g3905_i0 PRJNA1035005 4303 515 3.50905 18.0716075 Peranema 3287 Euglenozoa other_Eukaryota 924 0   NTclustered gi|1803019098|gb|MT007870.1| 56466 g3905 i0 99.029 28.4019417475728 515 5 100 0 1 515 1509 2023 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 14627 924 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
5272004 5272004 PRJNA1035005_P_NODE_79885_length_244_cov_0.912281_g79479_i0 PRJNA1035005 79885 244 0.912281 2.22596564 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 147 9.81e-31   NTclustered gi|1624750051|ref|XM_029025954.1| 67003 g79479 i0 80.198 42.905737704918 202 34 82 4 46 244 312 114 Trypanosoma theileri 60S ribosomal protein L12 (TM35_000153020), partial mRNA blastn 10469 147 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
6546918 6546918 PRJNA1035005_P_NODE_41206_length_268_cov_1.497436_g40800_i0 PRJNA1035005 41206 268 1.497436 4.01312848 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 473 4.419999999999999e-129   NTclustered gi|27461806|gb|AY130826.1| 56466 g40800 i0 98.513 1.00373134328358 269 3 100 1 1 268 1247 979 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 269 473 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
7385569 7385569 PRJNA1035005_P_NODE_3186_length_615_cov_4.033210_g2796_i0 PRJNA1035005 3186 615 4.03321 24.8042415 Peranema 3287 Euglenozoa other_Eukaryota 1103 0   NTclustered gi|1803019098|gb|MT007870.1| 56466 g2796 i0 99.024 10.8308943089431 615 6 100 0 1 615 1335 721 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 6661 1103 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
9096754 9096754 PRJNA1035005_P_NODE_83888_length_242_cov_1.846154_g83482_i0 PRJNA1035005 83888 242 1.846154 4.46769268 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 252 2e-62   NTclustered gi|686643044|ref|XM_009315693.1| 71804 g83482 i0 85.537 136.479338842975 242 33 99 2 2 242 627 867 Trypanosoma grayi elongation factor 1-alpha partial mRNA blastn 33028 252 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
11211245 11211245 PRJNA1035005_P_NODE_71649_length_247_cov_0.896552_g71243_i0 PRJNA1035005 71649 247 0.896552 2.21448344 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 97.1 1.02e-15   NTclustered gi|2414483|emb|Y00055.1| 5656 g71243 i0 100 24.8137651821862 52 0 21 0 1 52 7451 7400 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 6129 97.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
11647506 11647506 PRJNA1035005_P_NODE_57030_length_252_cov_0.871508_g56624_i0 PRJNA1035005 57030 252 0.871508 2.19620016 Leishmania martiniquensis 1580590 Euglenozoa other_Eukaryota 171 6.05e-38   NTclustered gi|2787673234|ref|XM_067324684.1| 1580590 g56624 i0 80.909 11.2777777777778 220 38 87 4 4 221 629 412 Leishmania martiniquensis uncharacterized protein (LSCM1_07309), partial mRNA blastn 2842 171 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania martiniquensis
12922411 12922411 PRJNA1035005_P_NODE_18511_length_307_cov_1.333333_g18105_i0 PRJNA1035005 18511 307 1.333333 4.09333231 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 497 3.06e-136   NTclustered gi|27461806|gb|AY130826.1| 56466 g18105 i0 95.806 1.00977198697068 310 10 100 2 1 307 711 402 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 310 497 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
16745970 16745970 PRJNA1035005_P_NODE_59834_length_251_cov_0.876404_g59428_i0 PRJNA1035005 59834 251 0.876404 2.19977404 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 289 1.59e-73   NTclustered gi|1002462470|ref|XM_015797146.1| 157538 g59428 i0 87.6 19.1513944223108 250 29 99 2 1 249 486 734 Leptomonas pyrrhocoris putative 60S ribosomal protein L7 mRNA blastn 4807 289 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
18020613 18020613 PRJNA1035005_P_NODE_25855_length_288_cov_1.446512_g25449_i0 PRJNA1035005 25855 288 1.446512 4.16595456 Porcisia hertigi 2761500 Euglenozoa other_Eukaryota 154 7.1e-33   NTclustered gi|2794848652|ref|XM_067897261.1| 2761500 g25449 i0 79.295 28.4756944444444 227 41 78 6 65 288 489 266 Porcisia hertigi uncharacterized protein (JKF63_01213), partial mRNA blastn 8201 154 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Porcisia Porcisia hertigi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;