RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1035005 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7821228 7821228 PRJNA1035005_P_NODE_10607_length_358_cov_1.091228_g10202_i0 PRJNA1035005 10607 358 1.091228 3.90659624 Platyamoeba placida 3454475 Discosea other_Eukaryota 401 2.9199999999999995e-107   NTclustered gi|33946348|gb|AY294153.1| 197527 g10202 i0 87.079 98.3184357541899 356 45 99 1 4 358 796 441 Platyamoeba placida actin mRNA, partial cds blastn 35198 401 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
14197828 14197828 PRJNA1035005_P_NODE_9992_length_364_cov_2.144330_g9587_i0 PRJNA1035005 9992 364 2.14433 7.8053612 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 562 1.29e-155   NTclustered gi|330902855|gb|JF298253.1| 1017091 g9587 i0 94.55 72.0164835164835 367 14 100 6 1 364 1467 1104 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 26214 562 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
21845705 21845705 PRJNA1035005_P_NODE_32718_length_279_cov_1.368932_g32312_i0 PRJNA1035005 32718 279 1.368932 3.81932028 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 490 4.59e-134   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g32312 i0 98.221 31.3799283154122 281 3 100 1 1 279 446 166 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 8755 490 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
23960305 23960305 PRJNA1035005_P_NODE_799_length_1602_cov_12.758012_g616_i0 PRJNA1035005 799 1602 12.758012 204.38335224 Acanthamoeba 5754 Discosea other_Eukaryota 289 1.15e-72   NTclustered gi|28194618|gb|AF479562.1| 29195 g616 i0 73.042 24.6011235955056 983 201 59 50 509 1453 433 1389 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 39411 291 0.993127147766323 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;