RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1035005 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169036 169036 PRJNA1035005_P_NODE_67481_length_248_cov_0.891429_g67075_i0 PRJNA1035005 67481 248 0.891429 2.21074392 Sterkiella nova 200597 SAR_Eukaryotes SAR_Eukaryotes 104 6.11e-18   NTclustered gi|405113123|gb|JX441315.1| 200597 g67075 i0 87.778 0.362903225806452 90 10 36 1 5 93 341 252 Sterkiella nova macronuclear nanochromosome, complete sequence blastn 90 104 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella nova
3558591 3558591 PRJNA1035005_P_NODE_79763_length_244_cov_0.912281_g79357_i0 PRJNA1035005 79763 244 0.912281 2.22596564 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 191 4.47e-44   NTclustered gi|10793|emb|X12769.1| 5908 g79357 i0 82.488 60.2172131147541 217 38 89 0 1 217 345 129 Tetrahymena pyriformis beta-tubulin gene 2 (beta-TT2) blastn 14693 191 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
3995489 3995489 PRJNA1035005_P_NODE_57784_length_252_cov_0.871508_g57378_i0 PRJNA1035005 57784 252 0.871508 2.19620016 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 204 5.96e-48   NTclustered gi|290684|gb|J04534.1|EUPBTUB 5936 g57378 i0 82.353 96.2539682539683 238 38 94 4 1 236 1309 1074 E.crassus macronuclear beta-tubulin gene, complete cds blastn 24256 204 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
7821341 7821341 PRJNA1035005_P_NODE_25287_length_289_cov_1.134259_g24881_i0 PRJNA1035005 25287 289 1.134259 3.27800851 Euplotes focardii 36767 SAR_Eukaryotes SAR_Eukaryotes 219 2.49e-52   NTclustered gi|603435|gb|S72098.1| 36767 g24881 i0 87.368 57.8442906574394 190 24 66 0 100 289 1320 1131 Euplotes focardii beta-tubulin gene, complete cds blastn 16717 219 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes focardii
8660959 8660959 PRJNA1035005_P_NODE_3147_length_620_cov_3.012797_g2757_i0 PRJNA1035005 3147 620 3.012797 18.6793414 Isotricha 5986 SAR_Eukaryotes SAR_Eukaryotes 608 2.9099999999999987e-169   NTclustered gi|92790159|emb|AJ965265.1| 5987 g2757 i0 84.466 192.527419354839 618 95 99 1 2 619 160 776 Isotricha prostoma partial mRNA for Polyubiqutin 3 (polyubiqutin 3 gene) blastn 119367 610 0.99672131147541 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Isotricha Isotricha prostoma
9935825 9935825 PRJNA1035005_P_NODE_10408_length_360_cov_1.087108_g10003_i0 PRJNA1035005 10408 360 1.087108 3.9135888 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 322 2.35e-83   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g10003 i0 98.361 56.8722222222222 183 3 51 0 1 183 2900 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 20474 322 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
13761292 13761292 PRJNA1035005_P_NODE_6171_length_431_cov_1.907821_g5769_i0 PRJNA1035005 6171 431 1.907821 8.22270851 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.012   NTclustered gi|471232194|ref|XM_004037166.1| 5932 g5769 i0 96.875 0.206496519721578 32 1 7 0 246 277 1407 1376 Ichthyophthirius multifiliis hypothetical protein (IMG5_058710) mRNA, partial cds blastn 89 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
19294863 19294863 PRJNA1035005_P_NODE_70356_length_247_cov_0.896552_g69950_i0 PRJNA1035005 70356 247 0.896552 2.21448344 Planilamina ovata 2684848 SAR_Eukaryotes SAR_Eukaryotes 346 9.14e-91   NTclustered gi|1784308423|gb|MN830171.1| 2684848 g69950 i0 94.273 18.3643724696356 227 11 91 2 22 247 1772 1547 Planilamina ovata isolate LJ-II-20170502 large subunit ribosomal RNA gene, partial sequence blastn 4536 346 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Kyaroikeidae Planilamina Planilamina ovata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;