RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7821345 7821345 PRJNA1035005_P_NODE_25427_length_288_cov_2.786047_g25021_i0 PRJNA1035005 25427 288 2.786047 8.02381536 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 180 1.17e-40   NTclustered gi|2874253698|emb|OY969424.1| 1672391 g25021 i0 80.769 0.954861111111111 234 41 81 4 1 232 584669 584900 MAG: uncultured Chloroflexia bacterium isolate MFD06229.bin.c.1 genome assembly, chromosome: 1 blastn 275 180 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
15472037 15472037 PRJNA1035005_P_NODE_86193_length_242_cov_0.923077_g85787_i0 PRJNA1035005 86193 242 0.923077 2.23384634 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 270 5.53e-68   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g85787 i0 88.393 131.351239669421 224 26 93 0 19 242 1568062 1567839 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 31787 270 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
23121434 23121434 PRJNA1035005_P_NODE_84319_length_242_cov_1.562130_g83913_i0 PRJNA1035005 84319 242 1.56213 3.7803546 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 148 2.6999999999999997e-31   NTclustered gi|2621704964|emb|OY762251.1| 2026734 g83913 i0 83.234 10.9793388429752 167 22 68 5 78 241 3913313 3913476 MAG: Dehalococcoidia bacterium isolate d71b8fac-47d3-446e-896e-fb0c20447f33 genome assembly, chromosome: 1 blastn 2657 148 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;