RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9096629 9096629 PRJNA1035005_P_NODE_6688_length_417_cov_1.247093_g6286_i0 PRJNA1035005 6688 417 1.247093 5.20037781 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 549 1.1699999999999996e-151   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g6286 i0 91.878 157.326139088729 394 31 94 1 1 394 666254 666646 Bdellovibrio sp. qaytius chromosome, complete genome blastn 65605 549 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
13761090 13761090 PRJNA1035005_P_NODE_10571_length_358_cov_1.515789_g10166_i0 PRJNA1035005 10571 358 1.515789 5.42652462 Peredibacter 263370 Bacteria Bacteria 562 1.27e-155   NTclustered gi|2631252187|gb|CP139487.1| 28202 g10166 i0 94.972 98.6173184357542 358 18 100 0 1 358 508866 509223 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 35305 562 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
13761166 13761166 PRJNA1035005_P_NODE_2571_length_707_cov_1.416404_g2187_i0 PRJNA1035005 2571 707 1.416404 10.01397628 Peredibacter 263370 Bacteria Bacteria 1236 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g2187 i0 98.166 261.861386138614 709 11 100 1 1 707 511243 511951 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 185136 1242 0.995169082125604 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
16746022 16746022 PRJNA1035005_P_NODE_67054_length_248_cov_1.468571_g66648_i0 PRJNA1035005 67054 248 1.468571 3.64205608 Peredibacter starrii 28202 Bacteria Bacteria 285 2.0299999999999997e-72   NTclustered gi|2631252187|gb|CP139487.1| 28202 g66648 i0 87.55 2.00806451612903 249 28 100 3 1 248 1230104 1230350 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 498 285 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;