RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA1035005 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2719255 2719255 PRJNA1035005_P_NODE_35743_length_275_cov_1.465347_g35337_i0 PRJNA1035005 35743 275 1.465347 4.02970425 Trebouxia sp. SL0000003 3350044 Plants Plants 60.2 1.51e-4   NTclustered gi|2917929620|emb|OZ234908.1| 3350044 g35337 i0 89.362 0.170909090909091 47 5 17 0 222 268 2144501 2144455 Trebouxia sp. SL0000003 genome assembly, chromosome: 3 blastn 47 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
7821546 7821546 PRJNA1035005_P_NODE_53587_length_253_cov_0.866667_g53181_i0 PRJNA1035005 53587 253 0.866667 2.19266751 Lobosphaera incisa 312850 Plants Plants 333 7.319999999999999e-87   NTclustered gi|725539263|gb|KM821265.1| 312850 g53181 i0 90.514 130.355731225296 253 23 100 1 1 253 135849 135598 Lobosphaera incisa chloroplast, complete genome blastn 32980 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
7821624 7821624 PRJNA1035005_P_NODE_64627_length_249_cov_0.886364_g64221_i0 PRJNA1035005 64627 249 0.886364 2.20704636 Ignatius tetrasporus 231078 Plants Plants 161 3.59e-35   NTclustered gi|220966697|gb|FJ539138.1| 231078 g64221 i0 78.838 62.5381526104418 241 49 96 2 1 240 523 762 Ignatius tetrasporus strain UTEX B 2012 elongation factor-1 alpha mRNA, partial cds blastn 15572 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ignatiales Ignatiaceae Ignatius Ignatius tetrasporus
9096535 9096535 PRJNA1035005_P_NODE_54868_length_253_cov_0.866667_g54462_i0 PRJNA1035005 54868 253 0.866667 2.19266751 Chlamydomonas incerta 51695 Plants Plants 172 1.69e-38   NTclustered gi|74272614|gb|DQ122872.1| 51695 g54462 i0 79.752 6.90909090909091 242 45 95 4 12 251 420 659 Chlamydomonas incerta mitochondrial ADP/ATP translocator (ANT) mRNA, complete cds; nuclear gene for mitochondrial product blastn 1748 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
10372071 10372071 PRJNA1035005_P_NODE_4009_length_534_cov_1.216920_g3611_i0 PRJNA1035005 4009 534 1.21692 6.4983528 Pseudochlorella signiensis 173497 Plants Plants 874 0   NTclustered gi|725650714|ref|NC_025529.1| 173497 g3611 i0 96.591 130.063670411985 528 17 99 1 8 534 151059 151586 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 69454 874 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
11647633 11647633 PRJNA1035005_P_NODE_7510_length_399_cov_2.352761_g7108_i0 PRJNA1035005 7510 399 2.352761 9.38751639 Trentepohlia sp. BN17 3063876 Plants Plants 76.8 2.27e-9   NTclustered gi|2192923729|ref|NC_060532.1| 3063876 g7108 i0 92.453 0.894736842105263 53 4 13 0 79 131 223485 223433 Trentepohlia sp. BN17 chloroplast, complete genome blastn 357 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia sp. BN17

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;