RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1035005 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1443620 1443620 PRJNA1035005_P_NODE_47802_length_259_cov_3.059140_g47396_i0 PRJNA1035005 47802 259 3.05914 7.9231726 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 84.2 8.36e-12   NTclustered gi|551624862|ref|XM_005792577.1| 280463 g47396 i0 77.778 16.7799227799228 135 30 52 0 1 135 520 386 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 4346 84.2 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
2719184 2719184 PRJNA1035005_P_NODE_2643_length_693_cov_3.701613_g2259_i0 PRJNA1035005 2643 693 3.701613 25.65217809 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 198 8.4e-46   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g2259 i0 81.028 30.1847041847042 253 44 36 2 149 399 151 401 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 20918 198 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;