RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1035005" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA1035005 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6547122 6547122 PRJNA1035005_P_NODE_6746_length_415_cov_2.219298_g6344_i0 PRJNA1035005 6746 415 2.219298 9.2100867 Dictyostelium purpureum 5786 Evosea other_Eukaryota 274 7.819999999999998e-69   NTclustered gi|330799393|ref|XM_003287682.1| 5786 g6344 i0 79.639 9.86506024096385 388 73 93 5 10 395 201 584 Dictyostelium purpureum 40S ribosomal protein S2 (DICPUDRAFT_32959), partial mRNA blastn 4094 274 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
7821228 7821228 PRJNA1035005_P_NODE_10607_length_358_cov_1.091228_g10202_i0 PRJNA1035005 10607 358 1.091228 3.90659624 Platyamoeba placida 3454475 Discosea other_Eukaryota 401 2.9199999999999995e-107   NTclustered gi|33946348|gb|AY294153.1| 197527 g10202 i0 87.079 98.3184357541899 356 45 99 1 4 358 796 441 Platyamoeba placida actin mRNA, partial cds blastn 35198 401 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
10371896 10371896 PRJNA1035005_P_NODE_15049_length_323_cov_1.376000_g14643_i0 PRJNA1035005 15049 323 1.376 4.44448 Entamoeba dispar 46681 Evosea other_Eukaryota 124 6.34e-24   NTclustered gi|167380911|ref|XM_001735454.1| 370354 g14643 i0 80.347 1.24458204334365 173 27 52 7 113 281 67 236 Entamoeba dispar SAW760 14-3-3 protein (EDI_244420), partial mRNA blastn 402 124 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
12922760 12922760 PRJNA1035005_P_NODE_6691_length_417_cov_0.906977_g6289_i0 PRJNA1035005 6691 417 0.906977 3.78209409 Dictyostelium purpureum 5786 Evosea other_Eukaryota 254 1.02e-62   NTclustered gi|330804280|ref|XM_003290077.1| 5786 g6289 i0 79.339 6.07913669064748 363 73 87 2 30 391 478 117 Dictyostelium purpureum ubiquitin-conjugating enzyme E2-17 kDa (DICPUDRAFT_56481), mRNA blastn 2535 254 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
14197828 14197828 PRJNA1035005_P_NODE_9992_length_364_cov_2.144330_g9587_i0 PRJNA1035005 9992 364 2.14433 7.8053612 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 562 1.29e-155   NTclustered gi|330902855|gb|JF298253.1| 1017091 g9587 i0 94.55 72.0164835164835 367 14 100 6 1 364 1467 1104 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 26214 562 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
16310271 16310271 PRJNA1035005_P_NODE_50833_length_256_cov_1.355191_g50427_i0 PRJNA1035005 50833 256 1.355191 3.46928896 Dictyostelium 5782 Evosea other_Eukaryota 148 2.89e-31   NTclustered gi|887421|emb|Z37109.1| 44689 g50427 i0 82.635 1.95703125 167 29 65 0 11 177 1870 2036 D.discoideum mRNA for major vault protein B blastn 501 148 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
16746208 16746208 PRJNA1035005_P_NODE_9774_length_367_cov_1.105442_g9369_i0 PRJNA1035005 9774 367 1.105442 4.05697214 Telaepolella tubasferens 1346289 Evosea other_Eukaryota 427 4.9599999999999985e-115   NTclustered gi|167859711|gb|EU273435.1| 1346289 g9369 i0 88.089 95.6948228882834 361 41 98 2 4 363 426 785 Telaepolella tubasferens clone 1 actin gene, partial cds blastn 35120 427 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Telaepolella Telaepolella tubasferens
18021097 18021097 PRJNA1035005_P_NODE_9875_length_366_cov_1.061433_g9470_i0 PRJNA1035005 9875 366 1.061433 3.88484478 Heterostelium album 2086695 Evosea other_Eukaryota 235 3.2099999999999996e-57   NTclustered gi|1160557950|ref|XM_020575808.1| 670386 g9470 i0 85.65 66.5874316939891 223 32 61 0 144 366 1332 1110 Polysphondylium pallidum PN500 ubiquitin (ubqI), partial mRNA blastn 24371 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
18859437 18859437 PRJNA1035005_P_NODE_3135_length_621_cov_1.994526_g2745_i0 PRJNA1035005 3135 621 1.994526 12.38600646 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 108 1.3e-18   NTclustered gi|3186|emb|X07792.1| 5791 g2745 i0 93.151 11.0112721417069 73 5 12 0 2 74 1435 1507 Physarum polycephalum actin gene blastn 6838 108 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
21845705 21845705 PRJNA1035005_P_NODE_32718_length_279_cov_1.368932_g32312_i0 PRJNA1035005 32718 279 1.368932 3.81932028 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 490 4.59e-134   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g32312 i0 98.221 31.3799283154122 281 3 100 1 1 279 446 166 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 8755 490 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
21845785 21845785 PRJNA1035005_P_NODE_4258_length_518_cov_2.098876_g3860_i0 PRJNA1035005 4258 518 2.098876 10.87217768 Diachea leucopodia 385471 Evosea other_Eukaryota 340 9.67e-89   NTclustered gi|2049856273|gb|MG963476.1| 385471 g3860 i0 78.654 99.5173745173745 520 105 99 4 2 518 560 44 Diachea leucopodia strain MA-Fungi 86465 elongation factor 1A (EF1a) gene, partial cds blastn 51550 340 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Diachea Diachea leucopodia
23960305 23960305 PRJNA1035005_P_NODE_799_length_1602_cov_12.758012_g616_i0 PRJNA1035005 799 1602 12.758012 204.38335224 Acanthamoeba 5754 Discosea other_Eukaryota 289 1.15e-72   NTclustered gi|28194618|gb|AF479562.1| 29195 g616 i0 73.042 24.6011235955056 983 201 59 50 509 1453 433 1389 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 39411 291 0.993127147766323 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;