RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1034995" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1034995 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7820971 7820971 PRJNA1034995_S_NODE_16247_length_459_cov_35.372596_g16094_i0 PRJNA1034995 16247 459 35.372596 162.36021564 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 579 1.6499999999999994e-160   NTclustered gi|84452201|emb|AM180899.1| 171953 g16094 i0 91.142 289.41394335512 429 35 93 3 13 440 1645 1219 Uncultured Acidobacteria bacterium partial 23S rRNA gene, clone LS_LKC11_kan2 blastn 132841 579 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
24394451 24394451 PRJNA1034995_S_NODE_19940_length_384_cov_73.595308_g19785_i0 PRJNA1034995 19940 384 73.595308 282.60598272 Acidobacteriota bacterium 1978231 Bacteria Bacteria 407 6.789999999999999e-109   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g19785 i0 89.905 91.0260416666667 317 30 82 2 39 353 317239 317555 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 34954 407 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;