RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1034995" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1034995 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3994875 3994875 PRJNA1034995_S_NODE_17284_length_436_cov_18.956743_g17129_i0 PRJNA1034995 17284 436 18.956743 82.65139948 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 693 0   NTclustered gi|821341785|gb|CP011389.1| 1309411 g17129 i0 97.767 546.098623853211 403 8 92 1 27 428 1637984 1637582 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 238099 693 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
12922014 12922014 PRJNA1034995_S_NODE_13811_length_537_cov_137.898785_g13668_i0 PRJNA1034995 13811 537 137.898785 740.51647545 uncultured Deinococcus sp. 158789 Bacteria Bacteria 929 0   NTclustered gi|199584206|gb|FJ028698.1| 158789 g13668 i0 100 91.2998137802607 503 0 94 0 1 503 503 1 Uncultured Deinococcus sp. clone SSB-84 16S ribosomal RNA gene, partial sequence blastn 49028 929 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus uncultured Deinococcus sp.
14196939 14196939 PRJNA1034995_S_NODE_13352_length_558_cov_34.114563_g13213_i0 PRJNA1034995 13352 558 34.114563 190.35926154 Trueperaceae bacterium 2026798 Bacteria Bacteria 676 0   NTclustered gi|2108366028|gb|CP070651.1| 2026798 g13213 i0 88.632 126.123655913978 563 55 99 6 1 556 7687 8247 MAG: Trueperaceae bacterium isolate bin86 chromosome blastn 70377 676 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;