RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1034995" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermoproteati · 2 ✖

bioproject 1

  • PRJNA1034995 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10371703 10371703 PRJNA1034995_S_NODE_32849_length_248_cov_5.887805_g32693_i0 PRJNA1034995 32849 248 5.887805 14.6017564 uncultured crenarchaeote 29281 Archaea Archaea 357 4.24e-94   NTclustered gi|42557759|emb|AJ627422.1| 29281 g32693 i0 95.133 74.3225806451613 226 11 91 0 1 226 40742 40517 Uncultured crenarchaeote genomic fragment 54d9 blastn 18432 357 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
12922160 12922160 PRJNA1034995_S_NODE_31051_length_261_cov_30.614679_g30895_i0 PRJNA1034995 31051 261 30.614679 79.90431219 Fervidicoccus fontis 683846 Archaea Archaea 52.8 0.024   NTclustered gi|383794914|gb|CP003423.1| 1163730 g30895 i0 100 0.10727969348659 28 0 11 0 179 206 1010413 1010440 Fervidicoccus fontis Kam940, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Fervidicoccales Fervidicoccaceae Fervidicoccus Fervidicoccus fontis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;