RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1034995" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1034995 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2718964 2718964 PRJNA1034995_S_NODE_39903_length_205_cov_7.944444_g39747_i0 PRJNA1034995 39903 205 7.944444 16.2861102 Endostelium crystalliferum 1485074 Discosea other_Eukaryota 78.7 2.95e-10   NTclustered gi|608606227|gb|KF705034.1| 1485074 g39747 i0 97.826 7.80975609756098 46 0 37 1 133 178 705 749 Endostelium crystalliferum 18S ribosomal RNA gene, partial sequence blastn 1601 78.7 1 Eukaryota Amoebozoa   Discosea Flabellinia     Endostelium Endostelium crystalliferum
12486538 12486538 PRJNA1034995_S_NODE_38210_length_214_cov_13.286550_g38054_i0 PRJNA1034995 38210 214 13.28655 28.433217 Acanthamoeba 5754 Discosea other_Eukaryota 339 1.29e-88   NTclustered gi|13162662|gb|AY026245.1| 766797 g38054 i0 95.327 96.2102803738318 214 9 100 1 1 214 650 862 Acanthamoeba sp. U/H-C1 small subunit ribosomal RNA gene, complete sequence blastn 20589 339 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba genotype T16
14197088 14197088 PRJNA1034995_S_NODE_30392_length_266_cov_15.946188_g30236_i0 PRJNA1034995 30392 266 15.946188 42.41686008 Vannella sp. strain 4354/I 325074 Discosea other_Eukaryota 383 7.59e-102   NTclustered gi|62865936|gb|AY929911.1| 325074 g30236 i0 98.182 82.7669172932331 220 3 82 1 17 235 1795 1576 Vannella sp. strain 4354/I 18S small subunit ribosomal RNA gene, partial sequence blastn 22016 383 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
15035374 15035374 PRJNA1034995_S_NODE_47692_length_172_cov_3.209302_g47536_i0 PRJNA1034995 47692 172 3.209302 5.51999944 Acanthamoeba 5754 Discosea other_Eukaryota 279 6.08e-71   NTclustered gi|562028|gb|U12386.1|ACU12386 5755 g47536 i0 98.734 132.104651162791 158 1 91 1 16 172 3909 4066 Acanthamoeba castellanii mitochondrion, complete genome blastn 22722 279 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;