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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1034994" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1034994 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4835638 4835638 PRJNA1034994_P_NODE_7484_length_249_cov_0.875000_g7400_i0 PRJNA1034994 7484 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 455 1.47e-123   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g7400 i0 99.598 8.95582329317269 249 1 100 0 1 249 1295 1047 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 2230 455 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
9935694 9935694 PRJNA1034994_P_NODE_7868_length_247_cov_2.655172_g7784_i0 PRJNA1034994 7868 247 2.655172 6.55827484 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 379 9.02e-101   NTclustered gi|937513727|gb|CP012850.1| 1353260 g7784 i0 94.332 33.9878542510121 247 14 100 0 1 247 848821 848575 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 8395 379 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
10371459 10371459 PRJNA1034994_P_NODE_1409_length_431_cov_1.678771_g1325_i0 PRJNA1034994 1409 431 1.678771 7.23550301 uncultured archaeon 115547 Archaea Archaea 797 0   NTclustered gi|219693722|gb|FJ490641.1| 115547 g1325 i0 100 99.9930394431555 431 0 100 0 1 431 888 458 Uncultured archaeon clone HBA131 16S ribosomal RNA gene, partial sequence blastn 43097 797 1 Archaea               uncultured archaeon
11210848 11210848 PRJNA1034994_P_NODE_4229_length_278_cov_1.331707_g4145_i0 PRJNA1034994 4229 278 1.331707 3.70214546 Thermoproteati 1783275 Archaea Archaea 457 4.639999999999999e-124   NTclustered gi|22797874|emb|AJ496176.1| 29281 g4145 i0 96.39 102.111510791367 277 10 99 0 2 278 8692 8416 Uncultured crenarchaeote 34 kb genomic fragment blastn 28387 457 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
14196840 14196840 PRJNA1034994_P_NODE_10052_length_241_cov_1.613095_g9968_i0 PRJNA1034994 10052 241 1.613095 3.88755895 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.022   NTclustered gi|323706731|gb|CP002529.1| 985053 g9968 i0 100 0.116182572614108 28 0 12 0 149 176 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
20133974 20133974 PRJNA1034994_P_NODE_6256_length_255_cov_1.186813_g6172_i0 PRJNA1034994 6256 255 1.186813 3.02637315 root 1 Root_unresolved Root_unresolved 455 1.51e-123   NTclustered gi|332143571|gb|JF694377.1| 29281 g6172 i0 98.824 100 255 3 100 0 1 255 488 742 Uncultured crenarchaeote clone G7 16S ribosomal RNA gene, partial sequence blastn 25500 455 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
21845169 21845169 PRJNA1034994_P_NODE_9578_length_243_cov_0.905882_g9494_i0 PRJNA1034994 9578 243 0.905882 2.20129326 Methanobacterium formicicum 2162 Archaea Archaea 219 2.0399999999999998e-52   NTclustered gi|952971377|emb|LN734822.1| 2162 g9494 i0 83.058 8.90946502057613 242 39 99 2 1 241 267168 266928 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 2165 219 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
22684432 22684432 PRJNA1034994_P_NODE_6798_length_251_cov_0.865169_g6714_i0 PRJNA1034994 6798 251 0.865169 2.17157419 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 425 1.16e-114   NTclustered gi|937513727|gb|CP012850.1| 1353260 g6714 i0 97.211 103.430278884462 251 7 100 0 1 251 849817 849567 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 25961 425 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;