RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1034994" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1034994 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3558175 3558175 PRJNA1034994_P_NODE_4583_length_273_cov_2.305000_g4499_i0 PRJNA1034994 4583 273 2.305 6.29265 Treponema 157 Bacteria Bacteria 499 7.45e-137   NTclustered gi|1807378492|gb|CP048020.1| 69710 g4499 i0 99.634 182.139194139194 273 1 100 0 1 273 2078249 2077977 Treponema vincentii strain OMZ 804 chromosome, complete genome blastn 49724 499 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
4835602 4835602 PRJNA1034994_P_NODE_3324_length_289_cov_1.314815_g3240_i0 PRJNA1034994 3324 289 1.314815 3.79981535 Treponema 157 Bacteria Bacteria 490 4.78e-134   NTclustered gi|1996296230|gb|CP031393.1| 58231 g3240 i0 97.232 193.494809688581 289 8 100 0 1 289 1679582 1679294 Treponema medium strain ATCC 700293 chromosome, complete genome blastn 55920 490 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema medium
18020122 18020122 PRJNA1034994_P_NODE_7175_length_249_cov_2.431818_g7091_i0 PRJNA1034994 7175 249 2.431818 6.05522682 Treponema bryantii 163 Bacteria Bacteria 353 5.52e-93   NTclustered gi|2581915939|dbj|AP025286.1| 163 g7091 i0 92.4 150.273092369478 250 16 100 3 1 249 704162 703915 Treponema bryantii JCM 32280 DNA, complete genome blastn 37418 353 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema bryantii
19294029 19294029 PRJNA1034994_P_NODE_1236_length_462_cov_1.974293_g1152_i0 PRJNA1034994 1236 462 1.974293 9.12123366 Treponema parvum 138851 Bacteria Bacteria 484 3.73e-132   NTclustered gi|2023447176|gb|CP054142.1| 138851 g1152 i0 86.682 194.705627705628 443 51 95 8 25 462 452995 452556 Treponema parvum strain ATCC 700770 chromosome, complete genome blastn 89954 484 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema parvum
23120413 23120413 PRJNA1034994_P_NODE_1639_length_396_cov_1.851393_g1555_i0 PRJNA1034994 1639 396 1.851393 7.33151628 Treponema sp. 166 Bacteria Bacteria 508 1.87e-139   NTclustered gi|2189480979|gb|CP091737.1| 166 g1555 i0 89.924 205.335858585859 397 37 100 3 1 396 1474479 1474873 MAG: Treponema sp. isolate nC27_bin.160.fa chromosome blastn 81313 508 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;