RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1034994" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1034994 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1442961 1442961 PRJNA1034994_P_NODE_1342_length_442_cov_0.967480_g1258_i0 PRJNA1034994 1342 442 0.96748 4.2762616 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 617 3.36e-172   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g1258 i0 91.874 434.273755656109 443 34 100 2 1 442 1858602 1858161 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 191949 617 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
11646838 11646838 PRJNA1034994_P_NODE_7330_length_249_cov_0.875000_g7246_i0 PRJNA1034994 7330 249 0.875 2.17875 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 346 9.229999999999999e-91   NTclustered gi|2626282194|emb|OY839116.1| 2026734 g7246 i0 92.213 148.116465863454 244 19 98 0 6 249 668286 668043 MAG: Dehalococcoidia bacterium isolate 44b3abb6-b6b9-4f11-be96-93ee54cc77f6 genome assembly, chromosome: 1 blastn 36881 346 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
18020073 18020073 PRJNA1034994_P_NODE_1175_length_472_cov_2.102757_g1091_i0 PRJNA1034994 1175 472 2.102757 9.92501304 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 540 8.04e-149   NTclustered gi|2874254066|emb|OY970149.1| 1672391 g1091 i0 87.421 139.173728813559 477 51 99 8 1 471 565333 564860 MAG: uncultured Chloroflexia bacterium isolate MFD05747.bin.c.2 genome assembly, chromosome: 1 blastn 65690 540 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;