RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1034994" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1034994 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16309936 16309936 PRJNA1034994_P_NODE_1133_length_480_cov_1.695332_g1049_i0 PRJNA1034994 1133 480 1.695332 8.1375936 Chlamydiia 204429 Bacteria Bacteria 627 6.109999999999999e-175   NTclustered gi|18029193|gb|AF364564.1| 174324 g1049 i0 90.289 110.147916666667 484 39 100 7 1 480 70 549 Uncultured Chlamydiales bacterium clone P-4 16S ribosomal RNA gene, partial sequence blastn 52871 627 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
20133923 20133923 PRJNA1034994_P_NODE_1096_length_490_cov_1.016787_g1012_i0 PRJNA1034994 1096 490 1.016787 4.9822563 Candidatus Protochlamydia 282132 Bacteria Bacteria 479 1.8499999999999998e-130   NTclustered gi|1691252667|emb|BX908798.2| 264201 g1012 i0 86.667 158.820408163265 435 55 89 3 1 434 2154109 2153677 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 77822 479 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;